Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
FOXA1P55317 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
FOXA1P55317 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 AL078621.3-201ENST00000623707 2042 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 RN7SKP275-201ENST00000364626 301 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.32□□□□□ -1.56
FOXA1P55317 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 CDY8P-201ENST00000428380 1279 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
FOXA1P55317 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 CDY20P-201ENST00000447528 1279 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AP006222.1-205ENST00000450734 457 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AL358876.1-201ENST00000453364 1075 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 CTSLP6-201ENST00000458273 1002 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.32□□□□□ -1.56
FOXA1P55317 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.32□□□□□ -1.56
FOXA1P55317 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.32□□□□□ -1.56
FOXA1P55317 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.32□□□□□ -1.56
FOXA1P55317 RNA5SP473-201ENST00000516402 125 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC5.32□□□□□ -1.56
FOXA1P55317 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.32□□□□□ -1.56
FOXA1P55317 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.32□□□□□ -1.56
FOXA1P55317 AC023310.2-201ENST00000553844 547 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
FOXA1P55317 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
FOXA1P55317 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
FOXA1P55317 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.32□□□□□ -1.56
FOXA1P55317 AC129778.1-202ENST00000623812 261 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AL591379.1-207ENST00000635982 261 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.32□□□□□ -1.56
FOXA1P55317 AL596275.2-207ENST00000641188 675 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AC073869.8-201ENST00000641806 335 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
FOXA1P55317 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
FOXA1P55317 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
FOXA1P55317 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
FOXA1P55317 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
FOXA1P55317 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
FOXA1P55317 AC018628.1-201ENST00000624147 3819 ntBASIC5.32□□□□□ -1.56
FOXA1P55317 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
FOXA1P55317 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 AL360270.2-201ENST00000562952 5985 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 AC004158.1-201ENST00000564508 4319 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.31□□□□□ -1.56
FOXA1P55317 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
FOXA1P55317 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.31□□□□□ -1.56
FOXA1P55317 RPL24P2-201ENST00000421023 475 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.31□□□□□ -1.56
FOXA1P55317 GAPDHP34-201ENST00000432112 823 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 CLNS1AP1-201ENST00000435954 682 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.31□□□□□ -1.56
FOXA1P55317 VDAC2P4-201ENST00000452925 711 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.31□□□□□ -1.56
FOXA1P55317 RPL37P23-201ENST00000492641 294 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.31□□□□□ -1.56
FOXA1P55317 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 HMGN1P9-201ENST00000515212 298 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.31□□□□□ -1.56
FOXA1P55317 RN7SL290P-201ENST00000578661 300 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.31□□□□□ -1.56
FOXA1P55317 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.31□□□□□ -1.56
FOXA1P55317 AC026367.3-201ENST00000619032 590 ntBASIC5.31□□□□□ -1.56
FOXA1P55317 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.31□□□□□ -1.56
FOXA1P55317 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.31□□□□□ -1.56
FOXA1P55317 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
FOXA1P55317 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
FOXA1P55317 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 AL034549.2-201ENST00000618285 3373 ntBASIC5.3□□□□□ -1.56
FOXA1P55317 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.3□□□□□ -1.56
FOXA1P55317 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 AC130360.2-201ENST00000533477 1556 ntBASIC5.3□□□□□ -1.56
FOXA1P55317 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.3□□□□□ -1.56
FOXA1P55317 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
FOXA1P55317 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
FOXA1P55317 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.3□□□□□ -1.56
FOXA1P55317 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 OR7E25P-201ENST00000344844 931 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms