Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.84□□□□□ -1.31
SMARCA1P28370 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.84□□□□□ -1.32
SMARCA1P28370 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
SMARCA1P28370 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC092724.1-201ENST00000624623 3397 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SMARCA1P28370 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SMARCA1P28370 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SMARCA1P28370 PKIB-203ENST00000368446 556 ntTSL 2 BASIC6.83□□□□□ -1.32
SMARCA1P28370 RNU6-925P-201ENST00000384629 104 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 GLS-203ENST00000409215 632 ntTSL 4 BASIC6.83□□□□□ -1.32
SMARCA1P28370 RPL23AP18-201ENST00000416139 468 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.83□□□□□ -1.32
SMARCA1P28370 TXNP2-201ENST00000443918 295 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.83□□□□□ -1.32
SMARCA1P28370 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC011476.1-201ENST00000466725 307 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.83□□□□□ -1.32
SMARCA1P28370 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC6.83□□□□□ -1.32
SMARCA1P28370 RN7SKP288-201ENST00000516227 268 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6.83□□□□□ -1.32
SMARCA1P28370 IGLVIV-66-1-201ENST00000521832 460 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AP004609.2-201ENST00000532177 190 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC005000.1-201ENST00000536192 288 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 AC068305.2-201ENST00000550567 1205 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 ABI1P1-201ENST00000603375 1120 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 MVP-219ENST00000629059 120 ntTSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 MAPK10-350ENST00000641777 965 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SMARCA1P28370 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.83□□□□□ -1.32
SMARCA1P28370 Z83820.1-201ENST00000456978 1499 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SMARCA1P28370 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SMARCA1P28370 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC083837.1-201ENST00000565297 2994 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SMARCA1P28370 DDX6P1-205ENST00000441966 1436 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 AC027279.4-201ENST00000624371 2072 ntBASIC6.83□□□□□ -1.32
SMARCA1P28370 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.83□□□□□ -1.32
SMARCA1P28370 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
SMARCA1P28370 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.82□□□□□ -1.32
SMARCA1P28370 GTF2IP4-201ENST00000453092 2054 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
SMARCA1P28370 RNU6-697P-201ENST00000363348 107 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 RNA5SP500-201ENST00000364486 119 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
SMARCA1P28370 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
SMARCA1P28370 CBX1P3-201ENST00000413296 527 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 SFR1P2-201ENST00000421841 730 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.82□□□□□ -1.32
SMARCA1P28370 RPL12P11-201ENST00000439970 501 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 AC144530.1-201ENST00000452862 555 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 AC084754.1-201ENST00000463466 464 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 RN7SL57P-201ENST00000493687 290 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 SSR3-208ENST00000496050 579 ntTSL 4 BASIC6.82□□□□□ -1.32
SMARCA1P28370 AC093763.2-201ENST00000505334 1223 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 C1GALT1P2-201ENST00000510813 1104 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC6.82□□□□□ -1.32
SMARCA1P28370 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 HMGN2P36-201ENST00000529541 409 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 AL121594.2-201ENST00000541658 472 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 AC074029.2-201ENST00000551045 634 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC6.82□□□□□ -1.32
SMARCA1P28370 CKS1BP1-201ENST00000555221 240 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 AC027176.2-201ENST00000559166 746 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 AL163952.1-202ENST00000569625 600 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC6.82□□□□□ -1.32
SMARCA1P28370 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC6.82□□□□□ -1.32
SMARCA1P28370 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms