Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RN7SKP166-201ENST00000410812 305 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 GNG5P5-201ENST00000420444 220 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 AL445687.2-201ENST00000458156 728 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 RN7SL72P-201ENST00000460697 269 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.35□□□□□ -1.55
HOXD4P09016 RPS26P39-201ENST00000469206 341 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 AL035690.1-201ENST00000490892 383 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 RN7SL57P-201ENST00000493687 290 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HOXD4P09016 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.35□□□□□ -1.55
HOXD4P09016 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.35□□□□□ -1.55
HOXD4P09016 SNORA70.20-201ENST00000516848 126 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 CYCSP22-201ENST00000517555 339 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.35□□□□□ -1.55
HOXD4P09016 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXD4P09016 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.35□□□□□ -1.55
HOXD4P09016 NPM1P42-201ENST00000560329 862 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 MTATP6P25-201ENST00000574491 261 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 AC010503.3-201ENST00000594355 540 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 AL139099.4-201ENST00000614802 114 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 AP005431.1-201ENST00000618479 319 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 AC002044.3-201ENST00000623314 541 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.35□□□□□ -1.55
HOXD4P09016 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXD4P09016 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXD4P09016 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
HOXD4P09016 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
HOXD4P09016 AC022164.1-201ENST00000568767 2673 ntBASIC5.35□□□□□ -1.55
HOXD4P09016 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HOXD4P09016 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HOXD4P09016 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXD4P09016 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
HOXD4P09016 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
HOXD4P09016 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXD4P09016 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HOXD4P09016 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
HOXD4P09016 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXD4P09016 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXD4P09016 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXD4P09016 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXD4P09016 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXD4P09016 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HOXD4P09016 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.34□□□□□ -1.55
HOXD4P09016 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXD4P09016 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXD4P09016 AL391361.1-201ENST00000405580 489 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 SNRPEP6-201ENST00000407465 277 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXD4P09016 MYL6P5-201ENST00000412707 459 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXD4P09016 NMD3P2-201ENST00000421815 761 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXD4P09016 RPS27AP6-201ENST00000427962 448 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXD4P09016 AC079922.1-201ENST00000443291 359 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 AP000281.1-201ENST00000444036 316 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
HOXD4P09016 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXD4P09016 AC022784.5-201ENST00000522241 437 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXD4P09016 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXD4P09016 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXD4P09016 IGBP1P1-201ENST00000554337 1009 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
HOXD4P09016 AC016180.1-201ENST00000567945 403 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 MIR4260-201ENST00000583107 67 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.34□□□□□ -1.55
HOXD4P09016 AC020916.2-201ENST00000591242 360 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXD4P09016 AC145423.1-201ENST00000605712 336 ntBASIC5.34□□□□□ -1.55
HOXD4P09016 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXD4P09016 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXD4P09016 AC016583.1-201ENST00000624221 2431 ntBASIC5.34□□□□□ -1.56
HOXD4P09016 TET1P1-201ENST00000426627 2301 ntBASIC5.34□□□□□ -1.56
HOXD4P09016 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.34□□□□□ -1.56
HOXD4P09016 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
HOXD4P09016 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
HOXD4P09016 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
HOXD4P09016 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
HOXD4P09016 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXD4P09016 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXD4P09016 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXD4P09016 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
HOXD4P09016 AC144833.1-201ENST00000567953 4089 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
HOXD4P09016 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXD4P09016 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
HOXD4P09016 OR10R3P-201ENST00000361688 942 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
HOXD4P09016 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXD4P09016 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXD4P09016 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXD4P09016 MIR1178-201ENST00000408396 91 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXD4P09016 RANP7-201ENST00000418085 644 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXD4P09016 BX323845.3-201ENST00000428215 527 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 AC126120.1-201ENST00000431082 470 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.33□□□□□ -1.56
HOXD4P09016 AL663074.2-201ENST00000440621 479 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms