Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 RPL26P29-201ENST00000415623 438 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 RPL7L1P9-201ENST00000431298 745 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC019185.1-201ENST00000442718 389 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 EIF4EBP2P1-201ENST00000450009 343 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC099521.1-201ENST00000482557 334 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC012616.1-201ENST00000600294 197 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AL033543.1-201ENST00000623440 13454 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AL356967.1-201ENST00000406305 431 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 PRUNEP1-201ENST00000425846 705 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 CYCSP6-201ENST00000434498 302 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AL389915.2-201ENST00000454576 441 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AL035090.1-201ENST00000454835 332 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 CYP4F27P-201ENST00000514557 494 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AL390318.1-201ENST00000624564 687 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 LINC01739-205ENST00000641890 573 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 AP004607.3-201ENST00000530354 3915 ntBASIC10.81□□□□□ -0.68
SHROOM4Q9ULL8 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 BRD7P6-201ENST00000431406 1860 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 MIR130A-201ENST00000385274 89 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 AL390774.1-201ENST00000411924 246 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 NENFP1-201ENST00000419476 466 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 AC245028.1-201ENST00000423259 256 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 RPS23P9-201ENST00000448848 438 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 VDAC2P4-201ENST00000452925 711 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 GYG1P1-201ENST00000460864 698 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 AC087672.1-201ENST00000479876 766 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 AC110775.1-201ENST00000513721 462 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 AC063949.1-201ENST00000552900 865 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 AC018552.1-201ENST00000562099 811 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 IGLCOR22-2-201ENST00000605398 313 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 AL355974.3-201ENST00000617383 467 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 AC090527.3-201ENST00000619041 548 ntBASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SHROOM4Q9ULL8 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 MFSD8-239ENST00000641590 2479 ntBASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 AP003170.5-201ENST00000397185 335 ntBASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 AC013442.1-201ENST00000397347 228 ntBASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 Z80107.2-201ENST00000445127 392 ntBASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 AP004607.2-201ENST00000533949 322 ntBASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 AC091953.3-201ENST00000623220 236 ntBASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 AP002799.1-201ENST00000623552 423 ntBASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
SHROOM4Q9ULL8 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 CPS1-IT1-201ENST00000628368 2306 ntBASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms