Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 YWHAZP5-201ENST00000419975 730 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 PFN1P11-201ENST00000445829 389 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 UBE2V1P7-201ENST00000446395 340 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 MORF4L1P4-201ENST00000450245 976 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 RBMY2EP-202ENST00000456360 940 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC092754.2-201ENST00000463506 460 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC104689.1-201ENST00000473356 768 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 RPL7AP30-201ENST00000482859 796 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 HMGB1P38-201ENST00000490557 577 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC008427.1-201ENST00000503102 655 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 RNA5SP75-201ENST00000516841 111 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC093014.1-201ENST00000548926 724 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC091304.4-201ENST00000565703 620 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC068152.1-203ENST00000570314 254 ntTSL 3 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC099777.1-201ENST00000603779 1070 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AP001330.5-201ENST00000607176 411 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 OSTC-205ENST00000613215 876 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 U1.25-201ENST00000614085 162 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 U1.34-201ENST00000618578 162 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AL603755.1-201ENST00000619504 163 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 U1.31-201ENST00000620022 160 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AC131159.1-201ENST00000621854 213 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AP003400.2-201ENST00000624036 666 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AL162377.2-201ENST00000624532 337 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 ZNF663P-202ENST00000641770 1131 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 EEF1A1P9-201ENST00000514975 1383 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AL353743.3-201ENST00000442109 1468 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 POMP-202ENST00000460403 1428 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 DMD-205ENST00000359836 7339 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 RNU6-792P-201ENST00000363490 107 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 NOX1-203ENST00000372964 661 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 TRAV35-201ENST00000390462 330 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AL079341.1-201ENST00000404701 1207 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC105402.1-201ENST00000413336 545 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AL133325.1-201ENST00000421090 382 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 MTND1P10-201ENST00000426108 832 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AL096829.2-201ENST00000446582 742 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 LINC01364-201ENST00000452509 889 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC134050.1-201ENST00000495088 933 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 MTND5P13-201ENST00000513046 1079 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 FABP5P12-201ENST00000515543 389 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AP000926.4-201ENST00000527351 454 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 OR7E128P-201ENST00000532736 1024 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 SETP17-201ENST00000534163 817 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC7.53□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms