Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL133173.1-201ENST00000423458 397 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 RPL34P27-201ENST00000428810 349 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AL450996.1-201ENST00000445574 1202 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AL450023.1-201ENST00000450868 751 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 VDAC2P4-201ENST00000452925 711 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC115223.1-201ENST00000466377 870 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 MRPS21P7-201ENST00000566937 238 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 MIR1273E-201ENST00000581165 102 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 FO393422.1-201ENST00000603908 708 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC104695.2-201ENST00000605056 775 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 PPATP2-201ENST00000605635 508 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC004477.3-201ENST00000614061 590 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC025574.2-201ENST00000615621 514 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC087821.1-201ENST00000623639 567 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC007683.2-201ENST00000624681 714 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AL161912.4-201ENST00000623889 2468 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AL669831.5-218ENST00000591702 1873 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AL132656.3-201ENST00000606384 1595 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 U3.10-201ENST00000364459 214 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 METTL15P3-201ENST00000415522 1221 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 TNPO1P1-201ENST00000423641 1138 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 LDHAP2-201ENST00000437325 985 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 RPSAP39-201ENST00000467439 883 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 RPL5P16-201ENST00000471467 790 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 NRBF2P4-201ENST00000520874 850 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AC093524.1-201ENST00000564266 1094 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AC115989.2-201ENST00000578640 563 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 CR383656.5-201ENST00000547616 1340 ntBASIC5.69□□□□□ -1.5
LHX3Q9UBR4 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.69□□□□□ -1.5
LHX3Q9UBR4 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms