Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 PSG10P-201ENST00000501199 1500 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC114774.1-201ENST00000507410 1770 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC018797.1-201ENST00000510791 255 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 SNORA70.17-201ENST00000516449 133 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 MIR2117-201ENST00000516780 80 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 AP004607.3-201ENST00000530354 3915 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AL845552.1-201ENST00000556820 323 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 MRPS21P8-201ENST00000569196 235 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC092681.3-201ENST00000609463 678 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AL512652.1-201ENST00000619006 500 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC092451.3-201ENST00000625067 1343 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 THAP12P9-201ENST00000503971 2360 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
NKX3-1Q99801 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
NKX3-1Q99801 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
NKX3-1Q99801 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
NKX3-1Q99801 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
NKX3-1Q99801 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
NKX3-1Q99801 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 SNORA11.3-201ENST00000408471 128 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC099782.1-201ENST00000425889 474 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC242426.1-201ENST00000435270 960 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 RPSAP40-201ENST00000442343 891 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 HMGB1P7-201ENST00000450921 612 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 RSU1P1-201ENST00000453416 441 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 PFN1P6-201ENST00000476786 399 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC090958.1-201ENST00000511122 351 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 CR383658.1-201ENST00000514609 734 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 RN7SKP70-201ENST00000516655 271 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC026688.1-201ENST00000520639 1168 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC136777.2-201ENST00000522979 358 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 OR56A7P-201ENST00000524865 941 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
NKX3-1Q99801 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 GARSP1-201ENST00000570895 719 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 TXNP4-201ENST00000575018 310 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC060780.2-201ENST00000589047 198 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AL583832.1-201ENST00000603227 784 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AL645933.2-201ENST00000606743 1207 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AL021918.2-201ENST00000613415 194 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC104307.1-201ENST00000616142 196 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC096861.1-201ENST00000616652 240 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 MIR6778-201ENST00000617912 73 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 SNORA11.6-201ENST00000619030 128 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AC025262.3-201ENST00000623666 360 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 AL357562.1-201ENST00000624911 609 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.09□□□□□ -1.59
NKX3-1Q99801 OR11H2-202ENST00000641517 1085 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms