Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MIR208A-201ENST00000362287 71 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 EIF2S2P2-201ENST00000447161 982 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 AL672138.1-201ENST00000450604 1015 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 GTF2F2P1-201ENST00000511083 675 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 AP005403.1-201ENST00000579720 229 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 NXF4-202ENST00000416098 1465 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 AC079741.1-201ENST00000321498 212 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 RNA5SP171-201ENST00000391071 115 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 EEF1A1P1-201ENST00000447052 739 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 GAPDHP25-201ENST00000447061 1001 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 snoU13.22-201ENST00000459428 104 ntBASIC5.29□□□□□ -1.56
VPS13AQ96RL7 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 EPHA1-AS1-202ENST00000429289 5018 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS13AQ96RL7 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 RNA5SP332-201ENST00000391063 115 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 RPL32P23-201ENST00000397237 405 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AL049697.2-201ENST00000403708 294 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AL365220.1-201ENST00000432923 399 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 RN7SL352P-201ENST00000466002 277 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 RN7SKP253-201ENST00000516424 309 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 MIR4715-201ENST00000584117 79 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 TP53BP1-210ENST00000450115 6179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 ZNF217-201ENST00000302342 5633 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 FAM71F2-205ENST00000641605 5749 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AL034549.2-201ENST00000618285 3373 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 ADAMTS3-201ENST00000286657 6409 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 DHX40P1-201ENST00000588725 1412 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AL359265.2-201ENST00000434367 631 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AC073581.1-201ENST00000519036 575 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 SCARNA9-201ENST00000530422 353 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 NLRP3P1-201ENST00000622303 1785 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 THAP12P4-201ENST00000528321 2266 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AL158073.1-201ENST00000426848 1104 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AL451062.2-201ENST00000427515 271 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AC109327.1-201ENST00000471666 403 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 MORF4L1P3-201ENST00000525966 950 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AC099494.2-201ENST00000623371 978 ntBASIC5.28□□□□□ -1.56
VPS13AQ96RL7 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 DOCK1-206ENST00000623213 5761 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS13AQ96RL7 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms