Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC004129.2-201ENST00000457229 287 ntBASIC6.11□□□□□ -1.43
PTPN9P43378 SNRPCP3-201ENST00000474888 476 ntBASIC6.11□□□□□ -1.43
PTPN9P43378 AC099521.1-201ENST00000482557 334 ntBASIC6.11□□□□□ -1.43
PTPN9P43378 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC6.11□□□□□ -1.43
PTPN9P43378 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.11□□□□□ -1.43
PTPN9P43378 GAPDHP71-201ENST00000511530 1003 ntBASIC6.11□□□□□ -1.43
PTPN9P43378 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC6.11□□□□□ -1.43
PTPN9P43378 Y_RNA.667-201ENST00000516212 107 ntBASIC6.11□□□□□ -1.43
PTPN9P43378 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC6.11□□□□□ -1.43
PTPN9P43378 OR10D4P-201ENST00000525892 951 ntBASIC6.11□□□□□ -1.43
PTPN9P43378 PCNAP4-201ENST00000532690 730 ntBASIC6.11□□□□□ -1.43
PTPN9P43378 AC006530.1-201ENST00000555980 571 ntBASIC6.11□□□□□ -1.43
PTPN9P43378 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC6.11□□□□□ -1.43
PTPN9P43378 AC090826.1-203ENST00000569235 490 ntBASIC6.11□□□□□ -1.43
PTPN9P43378 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC6.11□□□□□ -1.43
PTPN9P43378 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC6.11□□□□□ -1.43
PTPN9P43378 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.11□□□□□ -1.43
PTPN9P43378 Six3os1_2.1-201ENST00000616963 217 ntBASIC6.11□□□□□ -1.43
PTPN9P43378 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.11□□□□□ -1.43
PTPN9P43378 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.11□□□□□ -1.43
PTPN9P43378 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
PTPN9P43378 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
PTPN9P43378 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.11□□□□□ -1.43
PTPN9P43378 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
PTPN9P43378 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.11□□□□□ -1.43
PTPN9P43378 CDY11P-201ENST00000447168 1651 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
PTPN9P43378 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
PTPN9P43378 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.1□□□□□ -1.43
PTPN9P43378 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
PTPN9P43378 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
PTPN9P43378 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.1□□□□□ -1.43
PTPN9P43378 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
PTPN9P43378 RNU1-150P-201ENST00000362491 162 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 Y_RNA.110-201ENST00000363220 99 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 RNA5SP500-201ENST00000364486 119 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.1□□□□□ -1.43
PTPN9P43378 VN1R12P-201ENST00000403778 876 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.1□□□□□ -1.43
PTPN9P43378 RCC2P2-201ENST00000422174 918 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.1□□□□□ -1.43
PTPN9P43378 AL390879.2-203ENST00000426943 1121 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC6.1□□□□□ -1.43
PTPN9P43378 DEFA9P-201ENST00000433042 285 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 NDUFS5P5-201ENST00000437256 321 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 HGF-207ENST00000453018 721 ntTSL 3 BASIC6.1□□□□□ -1.43
PTPN9P43378 RNU1-88P-201ENST00000459274 128 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 RN7SL57P-201ENST00000493687 290 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC6.1□□□□□ -1.43
PTPN9P43378 PANCR-201ENST00000503456 493 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 OR5H7P-201ENST00000514084 930 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 RNA5SP438-201ENST00000516561 112 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 CETN3-206ENST00000522864 738 ntTSL 3 BASIC6.1□□□□□ -1.43
PTPN9P43378 BCAS2P1-201ENST00000528022 632 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 AP000648.1-201ENST00000529682 397 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 CASP5-209ENST00000531367 879 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 TOMM20P1-201ENST00000534518 427 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 HNRNPCP1-201ENST00000556181 766 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC6.1□□□□□ -1.43
PTPN9P43378 AC010547.7-201ENST00000570323 333 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.1□□□□□ -1.43
PTPN9P43378 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 AL031601.1-201ENST00000605702 394 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC6.1□□□□□ -1.43
PTPN9P43378 AC025262.3-201ENST00000623666 360 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 AC129778.1-202ENST00000623812 261 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 AL591379.1-207ENST00000635982 261 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
PTPN9P43378 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
PTPN9P43378 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
PTPN9P43378 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
PTPN9P43378 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.1□□□□□ -1.43
PTPN9P43378 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.1□□□□□ -1.43
PTPN9P43378 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
PTPN9P43378 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
PTPN9P43378 AC015799.1-201ENST00000622996 3122 ntBASIC6.1□□□□□ -1.43
PTPN9P43378 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
PTPN9P43378 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC6.09□□□□□ -1.43
PTPN9P43378 PDZK1P1-202ENST00000425209 1350 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
PTPN9P43378 SUGT1P2-201ENST00000379452 992 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 RN7SKP279-201ENST00000411383 298 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.09□□□□□ -1.43
PTPN9P43378 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 CRIP1P1-201ENST00000427567 185 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC6.09□□□□□ -1.43
PTPN9P43378 EIF5AP4-201ENST00000441206 465 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC6.09□□□□□ -1.43
PTPN9P43378 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.09□□□□□ -1.43
PTPN9P43378 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms