Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 AC009962.1-201ENST00000567327 3813 ntBASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 RNU6ATAC18P-201ENST00000408413 101 ntBASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 RMRPP5-201ENST00000411156 267 ntBASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 PA2G4P6-201ENST00000438325 1197 ntBASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 AC011840.5-201ENST00000582125 771 ntBASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 MFSD8-216ENST00000641147 4009 ntBASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 DOCK11P1-201ENST00000553480 5932 ntBASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC10.86□□□□□ -0.67
SHROOM4Q9ULL8 THAP12P9-201ENST00000503971 2360 ntBASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 HSPA8P18-201ENST00000439846 1928 ntBASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 AC073610.1-201ENST00000489971 396 ntBASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 RPEP1-201ENST00000504507 658 ntBASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 FAM25E-202ENST00000608562 189 ntBASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 AC100827.5-201ENST00000615883 426 ntBASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 EEF1A1P30-201ENST00000429708 1315 ntBASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC10.85□□□□□ -0.67
SHROOM4Q9ULL8 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 LCOR-201ENST00000286067 4542 ntBASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 RNA5SP319-201ENST00000362768 119 ntBASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 AC016027.5-201ENST00000427227 210 ntBASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 NAP1L4P3-201ENST00000432820 1147 ntBASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 RPS4XP1-201ENST00000482189 787 ntBASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 AC096754.1-201ENST00000508904 818 ntBASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
SHROOM4Q9ULL8 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.67
SHROOM4Q9ULL8 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 HCG14-201ENST00000444986 413 ntTSL 2 BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 AP000547.1-201ENST00000454360 617 ntBASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 AC137768.1-201ENST00000549998 553 ntBASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 SAMMSON-209ENST00000641222 1100 ntBASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 IARS-213ENST00000627121 4587 ntTSL 5 BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
SHROOM4Q9ULL8 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 RPS11P7-201ENST00000442125 465 ntBASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 AC009220.1-201ENST00000451614 275 ntBASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 AC090638.1-201ENST00000498296 909 ntBASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 AC021678.3-201ENST00000517893 476 ntBASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 EIF4EP5-201ENST00000528228 640 ntBASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 AC090424.1-201ENST00000535243 736 ntBASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 DPPA3P2-202ENST00000557188 1219 ntBASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 AC063977.5-201ENST00000601044 974 ntBASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 MAK-202ENST00000354489 3941 ntTSL 5 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC10.82□□□□□ -0.68
SHROOM4Q9ULL8 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC10.82□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms