Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC5.68□□□□□ -1.5
SHOX2O60902 RPL12P12-201ENST00000424633 501 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 MTND6P12-201ENST00000428247 522 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC5.68□□□□□ -1.5
SHOX2O60902 RPL19P16-201ENST00000433839 588 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 AL022324.2-201ENST00000434827 780 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 AL645939.3-201ENST00000435408 225 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 GTF3AP5-201ENST00000442645 697 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 OR7E116P-201ENST00000448529 957 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 TFP1-201ENST00000460564 572 ntTSL 4 BASIC5.68□□□□□ -1.5
SHOX2O60902 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.68□□□□□ -1.5
SHOX2O60902 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.68□□□□□ -1.5
SHOX2O60902 TFP1-203ENST00000490470 561 ntTSL 4 BASIC5.68□□□□□ -1.5
SHOX2O60902 MINOS1P4-201ENST00000515470 318 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.68□□□□□ -1.5
SHOX2O60902 AC110056.1-201ENST00000525759 911 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.68□□□□□ -1.5
SHOX2O60902 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.68□□□□□ -1.5
SHOX2O60902 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC5.68□□□□□ -1.5
SHOX2O60902 MIR4732-201ENST00000581873 76 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 MIR4271-201ENST00000582451 67 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 AC026898.1-201ENST00000586404 571 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 AC068726.1-201ENST00000610993 341 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 AC097641.3-201ENST00000613523 464 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC5.68□□□□□ -1.5
SHOX2O60902 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC5.68□□□□□ -1.5
SHOX2O60902 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHOX2O60902 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHOX2O60902 AC018717.1-201ENST00000457712 1505 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHOX2O60902 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHOX2O60902 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC5.67□□□□□ -1.5
SHOX2O60902 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHOX2O60902 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHOX2O60902 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHOX2O60902 AC139426.3-201ENST00000605648 2059 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHOX2O60902 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.67□□□□□ -1.5
SHOX2O60902 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.67□□□□□ -1.5
SHOX2O60902 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHOX2O60902 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHOX2O60902 MIR130A-201ENST00000385274 89 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.67□□□□□ -1.5
SHOX2O60902 VN1R12P-201ENST00000403778 876 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHOX2O60902 MIR1266-201ENST00000408125 84 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 MIR1271-201ENST00000408537 86 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 AC104333.2-201ENST00000422630 192 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 RIMKLBP2-201ENST00000424737 654 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 AC079807.1-201ENST00000429993 481 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHOX2O60902 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.67□□□□□ -1.5
SHOX2O60902 AC234771.4-201ENST00000441416 730 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 RNA5SP103-201ENST00000459503 118 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 AC063955.1-201ENST00000462872 685 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 RN7SL83P-201ENST00000468131 297 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 RN7SL790P-201ENST00000474043 298 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 AC015524.1-201ENST00000491585 472 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 DUTP1-201ENST00000493631 470 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 RN7SL104P-201ENST00000498686 293 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 SNORA26.10-201ENST00000516427 141 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC5.67□□□□□ -1.5
SHOX2O60902 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC5.67□□□□□ -1.5
SHOX2O60902 BTG1P1-201ENST00000540396 508 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.67□□□□□ -1.5
SHOX2O60902 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC5.67□□□□□ -1.5
SHOX2O60902 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.67□□□□□ -1.5
SHOX2O60902 AC024267.2-201ENST00000582737 417 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 AC006272.2-201ENST00000594725 163 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 AC036176.3-201ENST00000602456 418 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 AP001823.1-201ENST00000604056 1003 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 AC018690.1-201ENST00000608144 626 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.67□□□□□ -1.5
SHOX2O60902 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHOX2O60902 MIR6503-201ENST00000622884 86 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.67□□□□□ -1.5
SHOX2O60902 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
SHOX2O60902 AC020656.2-201ENST00000613291 5309 ntBASIC5.67□□□□□ -1.5
SHOX2O60902 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.66□□□□□ -1.5
SHOX2O60902 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.66□□□□□ -1.5
SHOX2O60902 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.66□□□□□ -1.5
SHOX2O60902 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHOX2O60902 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHOX2O60902 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.66□□□□□ -1.5
SHOX2O60902 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.66□□□□□ -1.5
SHOX2O60902 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHOX2O60902 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHOX2O60902 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHOX2O60902 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.66□□□□□ -1.5
SHOX2O60902 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.66□□□□□ -1.5
SHOX2O60902 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.66□□□□□ -1.5
SHOX2O60902 OSTCP4-201ENST00000424397 449 ntBASIC5.66□□□□□ -1.5
SHOX2O60902 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHOX2O60902 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC5.66□□□□□ -1.5
SHOX2O60902 AL389925.1-201ENST00000432257 728 ntBASIC5.66□□□□□ -1.5
SHOX2O60902 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms