Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.13■□□□□ 0.81
TTC28Q96AY4 MIR3197-201ENST00000582241 73 ntBASIC20.13■□□□□ 0.81
TTC28Q96AY4 LINC01711-201ENST00000598340 967 ntBASIC20.13■□□□□ 0.81
TTC28Q96AY4 AL390719.2-201ENST00000606993 987 ntBASIC20.13■□□□□ 0.81
TTC28Q96AY4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.13■□□□□ 0.81
TTC28Q96AY4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TTC28Q96AY4 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.13■□□□□ 0.81
TTC28Q96AY4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
TTC28Q96AY4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.13■□□□□ 0.81
TTC28Q96AY4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
TTC28Q96AY4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TTC28Q96AY4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TTC28Q96AY4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 AC244107.1-201ENST00000442033 332 ntBASIC20.12■□□□□ 0.81
TTC28Q96AY4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TTC28Q96AY4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TTC28Q96AY4 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TTC28Q96AY4 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 AP000867.3-201ENST00000524675 377 ntBASIC20.12■□□□□ 0.81
TTC28Q96AY4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.12■□□□□ 0.81
TTC28Q96AY4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TTC28Q96AY4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
TTC28Q96AY4 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.11■□□□□ 0.81
TTC28Q96AY4 AP002414.4-201ENST00000589764 1148 ntBASIC20.11■□□□□ 0.81
TTC28Q96AY4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.11■□□□□ 0.81
TTC28Q96AY4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
TTC28Q96AY4 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.11■□□□□ 0.81
TTC28Q96AY4 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TTC28Q96AY4 HLA-G-202ENST00000376815 851 ntBASIC20.11■□□□□ 0.81
TTC28Q96AY4 AL031284.1-201ENST00000419297 478 ntBASIC20.11■□□□□ 0.81
TTC28Q96AY4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
TTC28Q96AY4 AL121772.3-201ENST00000610840 674 ntBASIC20.11■□□□□ 0.81
TTC28Q96AY4 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
TTC28Q96AY4 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.11■□□□□ 0.81
TTC28Q96AY4 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TTC28Q96AY4 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.11■□□□□ 0.81
TTC28Q96AY4 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TTC28Q96AY4 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.1■□□□□ 0.81
TTC28Q96AY4 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TTC28Q96AY4 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TTC28Q96AY4 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.1■□□□□ 0.81
TTC28Q96AY4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TTC28Q96AY4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.1■□□□□ 0.81
TTC28Q96AY4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.1■□□□□ 0.81
TTC28Q96AY4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TTC28Q96AY4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TTC28Q96AY4 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TTC28Q96AY4 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.1■□□□□ 0.81
TTC28Q96AY4 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TTC28Q96AY4 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
TTC28Q96AY4 DRAXINP1-201ENST00000437611 948 ntBASIC20.1■□□□□ 0.81
TTC28Q96AY4 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.1■□□□□ 0.81
TTC28Q96AY4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
TTC28Q96AY4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.1■□□□□ 0.81
TTC28Q96AY4 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TTC28Q96AY4 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.09■□□□□ 0.81
TTC28Q96AY4 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TTC28Q96AY4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TTC28Q96AY4 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TTC28Q96AY4 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TTC28Q96AY4 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
TTC28Q96AY4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
TTC28Q96AY4 AC239800.4-201ENST00000603712 296 ntBASIC20.09■□□□□ 0.81
TTC28Q96AY4 AL353801.3-201ENST00000609898 542 ntBASIC20.09■□□□□ 0.81
TTC28Q96AY4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
TTC28Q96AY4 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TTC28Q96AY4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.08■□□□□ 0.81
TTC28Q96AY4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
TTC28Q96AY4 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
TTC28Q96AY4 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TTC28Q96AY4 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TTC28Q96AY4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.08■□□□□ 0.81
TTC28Q96AY4 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TTC28Q96AY4 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.08■□□□□ 0.81
TTC28Q96AY4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.08■□□□□ 0.81
TTC28Q96AY4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TTC28Q96AY4 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.08■□□□□ 0.81
TTC28Q96AY4 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TTC28Q96AY4 RASA4DP-201ENST00000460726 1199 ntBASIC20.08■□□□□ 0.81
TTC28Q96AY4 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TTC28Q96AY4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TTC28Q96AY4 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TTC28Q96AY4 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
TTC28Q96AY4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
TTC28Q96AY4 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
TTC28Q96AY4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TTC28Q96AY4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TTC28Q96AY4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.08■□□□□ 0.8
TTC28Q96AY4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.08■□□□□ 0.8
TTC28Q96AY4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.08■□□□□ 0.8
TTC28Q96AY4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms