Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
Sdc1P18828 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Sdc1P18828 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Sdc1P18828 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Sdc1P18828 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Sdc1P18828 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Tfap2a-209ENSMUST00000225180 1828 ntBASIC13.94□□□□□ -0.18
Sdc1P18828 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Sdc1P18828 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sdc1P18828 Gm43598-201ENSMUST00000202482 2479 ntBASIC13.93□□□□□ -0.18
Sdc1P18828 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC13.93□□□□□ -0.18
Sdc1P18828 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC13.93□□□□□ -0.18
Sdc1P18828 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Sdc1P18828 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Sdc1P18828 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Sdc1P18828 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Sdc1P18828 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC13.93□□□□□ -0.18
Sdc1P18828 Gm5812-201ENSMUST00000061073 957 ntBASIC13.93□□□□□ -0.18
Sdc1P18828 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Sdc1P18828 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC13.93□□□□□ -0.18
Sdc1P18828 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
Sdc1P18828 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sdc1P18828 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC13.92□□□□□ -0.18
Sdc1P18828 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC13.92□□□□□ -0.18
Sdc1P18828 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
Sdc1P18828 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC13.92□□□□□ -0.18
Sdc1P18828 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
Sdc1P18828 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC13.92□□□□□ -0.18
Sdc1P18828 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC13.92□□□□□ -0.18
Sdc1P18828 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Sdc1P18828 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC13.92□□□□□ -0.18
Sdc1P18828 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC13.92□□□□□ -0.18
Sdc1P18828 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC13.92□□□□□ -0.18
Sdc1P18828 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC13.92□□□□□ -0.18
Sdc1P18828 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sdc1P18828 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sdc1P18828 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sdc1P18828 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
Sdc1P18828 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sdc1P18828 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sdc1P18828 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sdc1P18828 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms