Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 RNA5SP305-201ENST00000362665 119 ntBASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 RN7SL346P-201ENST00000491561 294 ntBASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 BLNK-209ENST00000495266 440 ntTSL 5 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 PGAM1P13-201ENST00000507497 754 ntBASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 AL671862.1-201ENST00000515851 349 ntBASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 ALB-209ENST00000503124 1741 ntTSL 5 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 AC005725.1-201ENST00000577346 2607 ntBASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
SHROOM4Q9ULL8 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 ZNF658B-201ENST00000602828 3408 ntBASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 SNORD8-201ENST00000363915 110 ntBASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 AL133173.1-201ENST00000423458 397 ntBASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 AL603882.1-201ENST00000463059 681 ntBASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 DAP3-209ENST00000465375 729 ntTSL 2 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 MGST2-204ENST00000506797 634 ntTSL 2 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 AL445528.2-201ENST00000620582 470 ntBASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 AC104162.1-201ENST00000430831 2382 ntBASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 AC130304.1-201ENST00000622942 2385 ntBASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SHROOM4Q9ULL8 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 RNA5SP30-201ENST00000365552 115 ntBASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 AL136455.1-201ENST00000441083 1240 ntBASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 AC015983.1-201ENST00000441577 373 ntBASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 MIR2117-201ENST00000516780 80 ntBASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 MIR4260-201ENST00000583107 67 ntBASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC10.88□□□□□ -0.67
SHROOM4Q9ULL8 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 AL133325.1-201ENST00000421090 382 ntBASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 CEACAMP7-201ENST00000444105 496 ntBASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 AL035690.1-201ENST00000490892 383 ntBASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 MIR378J-201ENST00000611988 109 ntBASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 AC010401.2-201ENST00000575137 4934 ntBASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 LDHBP2-201ENST00000456969 1005 ntBASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 AC022616.2-201ENST00000523185 300 ntBASIC10.87□□□□□ -0.67
SHROOM4Q9ULL8 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC10.87□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms