Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-467P-201ENST00000517027 110 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC091078.2-201ENST00000557145 559 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC012414.2-201ENST00000559474 187 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC027281.1-201ENST00000574178 758 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 WBP1LP8-201ENST00000617401 327 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AP000720.1-201ENST00000625091 483 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AL163152.1-201ENST00000642001 374 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC006213.6-201ENST00000623722 4179 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 OFD1P15Y-201ENST00000411536 1392 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 OR13C1P-202ENST00000641378 2919 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 RNU1-134P-201ENST00000362935 165 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AL353625.1-202ENST00000366273 571 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 RNU6-171P-201ENST00000384354 107 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC007068.1-201ENST00000396690 844 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 CYCSP52-201ENST00000422857 310 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC017019.1-201ENST00000426129 261 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 BX323845.3-201ENST00000428215 527 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 RN7SL466P-201ENST00000497546 295 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 NPM1P27-201ENST00000502784 830 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC091965.3-201ENST00000506236 208 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 DUTP7-201ENST00000507982 486 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 OR10G5P-201ENST00000532733 358 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 MIR3691-201ENST00000578066 90 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 ELOCP28-201ENST00000590044 317 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC106730.3-201ENST00000624568 641 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 NEK2P2-201ENST00000438441 1338 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AC024341.1-201ENST00000526444 1552 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 NEPNP-201ENST00000404786 1371 ntBASIC5.92□□□□□ -1.46
COL28A1Q2UY09 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL28A1Q2UY09 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms