Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GAPDHP48-201ENST00000436626 961 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXD4P09016 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXD4P09016 AL136455.1-201ENST00000441083 1240 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 RPL5P25-201ENST00000441148 775 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 ZNF619P1-201ENST00000446539 752 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 AC016027.4-201ENST00000450866 277 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 AL136038.1-201ENST00000497246 351 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 AC114781.3-201ENST00000512083 142 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXD4P09016 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXD4P09016 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXD4P09016 AC027544.3-201ENST00000535082 757 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXD4P09016 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXD4P09016 AC007225.2-201ENST00000562529 256 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXD4P09016 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXD4P09016 OR51C1P-201ENST00000608504 942 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 MIR6809-201ENST00000612189 116 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 AL137067.2-201ENST00000621202 131 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXD4P09016 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXD4P09016 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
HOXD4P09016 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
HOXD4P09016 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 AC004656.1-201ENST00000568479 4951 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
HOXD4P09016 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
HOXD4P09016 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXD4P09016 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
HOXD4P09016 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
HOXD4P09016 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
HOXD4P09016 AC092692.1-201ENST00000623625 2595 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 AL603750.1-201ENST00000624216 1717 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXD4P09016 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 RN7SKP128-201ENST00000364270 303 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
HOXD4P09016 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
HOXD4P09016 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 OR7E101P-201ENST00000400428 513 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 RN7SKP286-201ENST00000410894 299 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 RN7SKP161-201ENST00000411110 305 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 RPS20P25-201ENST00000412447 352 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.41□□□□□ -1.54
HOXD4P09016 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXD4P09016 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXD4P09016 BMS1P13-201ENST00000417301 885 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXD4P09016 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXD4P09016 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXD4P09016 BX276092.6-201ENST00000430476 250 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 NDUFS5P5-201ENST00000437256 321 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXD4P09016 BMS1P10-201ENST00000443754 1120 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 RAB28P2-201ENST00000454299 641 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 BX276092.8-201ENST00000455722 250 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 AC111000.5-201ENST00000506559 1178 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 GAPDHP71-201ENST00000511530 1003 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.41□□□□□ -1.54
HOXD4P09016 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXD4P09016 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.41□□□□□ -1.54
HOXD4P09016 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXD4P09016 PCNAP4-201ENST00000532690 730 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 DPPA3P2-202ENST00000557188 1219 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC051619.2-201ENST00000559063 397 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXD4P09016 MIR4776-2-201ENST00000580204 80 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.41□□□□□ -1.54
HOXD4P09016 MIR3176-201ENST00000582210 90 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC027229.1-201ENST00000583887 253 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC006363.1-201ENST00000603806 463 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AL049840.6-201ENST00000604583 345 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC024589.2-201ENST00000605642 1294 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC107308.1-201ENST00000615897 301 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AC087821.1-201ENST00000623639 567 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AL357562.1-201ENST00000624911 609 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXD4P09016 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 159.8 ms