Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PMS2P3-207ENST00000529061 717 ntBASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 OR5AM1P-201ENST00000532136 1032 ntBASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 AC090236.2-201ENST00000587933 1101 ntBASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 AC092266.1-201ENST00000610958 165 ntBASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 AC245014.3-201ENST00000618589 347 ntBASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 AC144833.1-201ENST00000567953 4089 ntBASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
TRIM49D1C9J1S8 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC004158.1-201ENST00000564508 4319 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AL159987.1-201ENST00000347911 293 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 RNA5SP500-201ENST00000364486 119 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 U3.23-201ENST00000391132 200 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 RPS6P23-201ENST00000413224 722 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AL139158.1-201ENST00000424719 340 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 RPL6P30-201ENST00000443382 862 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 TAAR4P-201ENST00000454843 1039 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 PSAT1P4-201ENST00000466500 526 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 PCNAP4-201ENST00000532690 730 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AL356801.1-201ENST00000559320 294 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC002519.2-203ENST00000567043 837 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 MIR4260-201ENST00000583107 67 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC090607.5-201ENST00000615692 224 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC022919.1-201ENST00000624979 626 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 PDZK1P1-202ENST00000425209 1350 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 AL359715.3-201ENST00000569267 2123 ntBASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM49D1C9J1S8 MAPK10-328ENST00000641553 4009 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 RNA5SP187-201ENST00000384400 119 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 AC126120.1-201ENST00000431082 470 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 PNKDP1-201ENST00000435914 430 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 CFL1P4-201ENST00000451536 498 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 AZGP1P2-201ENST00000454506 345 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 RN7SL188P-201ENST00000469842 285 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 AL122020.1-201ENST00000472287 459 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 UBFD1P1-201ENST00000473259 814 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 DUTP7-201ENST00000507982 486 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 AC130360.2-201ENST00000533477 1556 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 MIR7853-201ENST00000584820 132 ntBASIC5.61□□□□□ -1.51
TRIM49D1C9J1S8 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 144.2 ms