Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.44
PCDH9Q9HC56 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
PCDH9Q9HC56 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AL442128.2-201ENST00000620246 1824 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 MFSD8-239ENST00000641590 2479 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC027279.4-201ENST00000624371 2072 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 CAP1P2-201ENST00000417455 1409 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 RNFT1P3-201ENST00000340898 1052 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 RNA5SP453-201ENST00000362503 119 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC083799.1-201ENST00000366451 910 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 RNA5SP91-201ENST00000390902 119 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC004386.1-201ENST00000393214 761 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AL096711.1-201ENST00000404780 554 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 NACAP7-201ENST00000407371 609 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC019070.1-201ENST00000415008 1024 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 MTND2P11-201ENST00000423638 648 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC015983.1-201ENST00000441577 373 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AL049829.1-201ENST00000465411 156 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 OR7E157P-201ENST00000494376 911 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 BCAS2P1-201ENST00000528022 632 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 TOMM20P1-201ENST00000534518 427 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC079905.1-201ENST00000549280 475 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 RPL12P48-201ENST00000605620 304 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC108673.3-201ENST00000609183 335 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AL021918.2-201ENST00000613415 194 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC015712.7-201ENST00000615211 635 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AL031658.2-201ENST00000616850 651 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AC025262.3-201ENST00000623666 360 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 AL137141.1-201ENST00000624622 4836 ntBASIC6.02□□□□□ -1.45
PCDH9Q9HC56 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PCDH9Q9HC56 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AL589826.1-201ENST00000340697 249 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AC087752.1-201ENST00000391360 558 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 KIF4CP-201ENST00000422742 1279 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 BX119904.3-201ENST00000428194 957 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 RSL24D1P8-201ENST00000434442 492 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AC099670.2-201ENST00000435130 321 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 BMS1P10-201ENST00000443754 1120 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 CST12P-201ENST00000457644 362 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 RNU1-88P-201ENST00000459274 128 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 HESX1-202ENST00000473921 757 ntTSL 5 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 PPP1R11P1-201ENST00000486095 376 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AP001960.1-201ENST00000506494 658 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AC027369.2-201ENST00000528030 440 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 AC134669.1-201ENST00000581275 672 ntBASIC6.01□□□□□ -1.45
PCDH9Q9HC56 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
PCDH9Q9HC56 HIRAP1-201ENST00000605318 787 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms