Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AC091390.2-201ENST00000432573 374 ntBASIC5.36□□□□□ -1.55
VPS13AQ96RL7 OR7A15P-201ENST00000449848 1009 ntBASIC5.36□□□□□ -1.55
VPS13AQ96RL7 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AC011487.3-201ENST00000593607 453 ntBASIC5.36□□□□□ -1.55
VPS13AQ96RL7 DNMBP-204ENST00000636706 5437 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 OIP5-AS1-201ENST00000500949 8829 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AC005034.3-201ENST00000604845 1747 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 MUC3A-201ENST00000379458 11226 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 SETBP1-201ENST00000282030 9899 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 CMKLR1-202ENST00000412676 5110 ntAPPRIS ALT2 TSL 3 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 RNA5SP44-201ENST00000410446 133 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 IGLV3-24-201ENST00000517477 197 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AC005000.1-201ENST00000536192 288 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 UBE2FP2-201ENST00000566646 462 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AC005377.1-201ENST00000605126 456 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 MAPK10-344ENST00000641718 3746 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AC110716.2-201ENST00000563865 3945 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AP003170.5-201ENST00000397185 335 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 SNORA11F-201ENST00000408237 128 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AC097484.1-201ENST00000471148 389 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 IGHV1-14-201ENST00000523391 241 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AC090607.5-201ENST00000615692 224 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 OR8B1P-202ENST00000641132 1178 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 THADA-206ENST00000405006 6310 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 RSL1D1-204ENST00000571133 5483 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS13AQ96RL7 MALAT1-202ENST00000534336 8708 ntBASIC5.35□□□□□ -1.55
VPS13AQ96RL7 RNA5SP388-201ENST00000362584 119 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 LDHAP2-201ENST00000437325 985 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AC096775.1-201ENST00000437724 448 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AL359073.1-201ENST00000448036 403 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AP001781.1-201ENST00000530977 207 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AC009117.1-201ENST00000563948 554 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AL513327.3-201ENST00000602618 469 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AC091932.2-201ENST00000623014 291 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AC008785.1-201ENST00000624475 456 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 FTO-223ENST00000640179 210 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 RBM12B-202ENST00000517700 6001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 OR13K1P-201ENST00000444577 975 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 RPL7L1P3-201ENST00000455249 689 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms