Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC008627.1-201ENST00000517511 1704 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC087516.1-201ENST00000561236 2428 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 RNA5SP279-201ENST00000365513 117 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 RNU11-201ENST00000387069 134 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 RNU2-18P-201ENST00000411224 162 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 RN7SKP279-201ENST00000411383 298 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 RPL35AP3-201ENST00000414680 288 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 AL139158.1-201ENST00000424719 340 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 GAPDHP59-201ENST00000435908 267 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 AL353662.1-201ENST00000439099 327 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 RN7SL284P-201ENST00000498823 275 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC106822.1-201ENST00000502647 526 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 AP002981.1-201ENST00000517692 975 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 EIF4EP5-201ENST00000528228 640 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 AL358913.1-201ENST00000554342 121 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC135626.1-201ENST00000556983 435 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC092332.1-201ENST00000563684 829 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC002519.2-203ENST00000567043 837 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 AL360012.1-201ENST00000602813 131 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC067838.1-201ENST00000606064 577 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 uc_338.29-201ENST00000615099 168 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC022400.9-201ENST00000623633 273 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS39Q96JC1 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS39Q96JC1 HSPD1P9-201ENST00000420325 1636 ntBASIC5.85□□□□□ -1.47
VPS39Q96JC1 RNF19BPY-201ENST00000458209 1550 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS39Q96JC1 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS39Q96JC1 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS39Q96JC1 MFSD8-239ENST00000641590 2479 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS39Q96JC1 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 U3.23-201ENST00000391132 200 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 GAPDHP15-201ENST00000398586 975 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 VN1R31P-201ENST00000417498 730 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 KIF4CP-201ENST00000422742 1279 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 VN1R21P-201ENST00000426703 765 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC242426.1-201ENST00000435270 960 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC023141.8-201ENST00000442554 208 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 BMS1P10-201ENST00000443754 1120 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 RN7SL269P-201ENST00000467795 305 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 AL157777.1-201ENST00000468100 304 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC092349.1-201ENST00000504903 310 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 ZNF322P1-201ENST00000568013 1209 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC145423.1-201ENST00000605712 336 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC005828.7-201ENST00000607331 556 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AL159169.2-201ENST00000610061 1269 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 AL139099.4-201ENST00000614802 114 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC025262.3-201ENST00000623666 360 ntBASIC5.84□□□□□ -1.47
VPS39Q96JC1 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms