Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 SNORA17A-201ENST00000391185 133 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 VN1R21P-201ENST00000426703 765 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 RPL12P16-201ENST00000431098 498 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 LRRC37A14P-201ENST00000452297 462 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 NXT1P1-201ENST00000458481 316 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 RPS23P2-201ENST00000463671 415 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 AC138866.2-201ENST00000508650 584 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 RN7SKP67-201ENST00000515905 235 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 AC112191.2-201ENST00000522428 333 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 AC126175.1-201ENST00000617041 758 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 AL035661.1-201ENST00000620459 1144 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 SNORA17.5-201ENST00000630429 132 ntBASIC5.78□□□□□ -1.48
LHX3Q9UBR4 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LHX3Q9UBR4 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.77□□□□□ -1.48
LHX3Q9UBR4 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.77□□□□□ -1.48
LHX3Q9UBR4 AC093829.1-201ENST00000506662 1618 ntBASIC5.77□□□□□ -1.48
LHX3Q9UBR4 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 RNA5SP46-201ENST00000362370 120 ntBASIC5.77□□□□□ -1.49
LHX3Q9UBR4 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 RN7SKP286-201ENST00000410894 299 ntBASIC5.77□□□□□ -1.49
LHX3Q9UBR4 RN7SKP279-201ENST00000411383 298 ntBASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AL596448.1-201ENST00000415024 392 ntBASIC5.77□□□□□ -1.49
LHX3Q9UBR4 BMS1P17-202ENST00000416720 316 ntBASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 EEF1B2P6-201ENST00000445713 673 ntBASIC5.77□□□□□ -1.49
LHX3Q9UBR4 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 RPL7P51-201ENST00000490532 749 ntBASIC5.77□□□□□ -1.49
LHX3Q9UBR4 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 HIRAP1-201ENST00000605318 787 ntBASIC5.77□□□□□ -1.49
LHX3Q9UBR4 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 RN7SL787P-201ENST00000613000 284 ntBASIC5.77□□□□□ -1.49
LHX3Q9UBR4 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 AC034229.2-201ENST00000566945 2508 ntBASIC5.77□□□□□ -1.49
LHX3Q9UBR4 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LHX3Q9UBR4 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 RN7SKP69-201ENST00000365390 305 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 RNA5SP131-201ENST00000365452 119 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC087752.1-201ENST00000391360 558 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms