Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC073581.1-201ENST00000519036 575 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AC104997.1-201ENST00000519761 717 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC021451.1-201ENST00000523498 1129 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AC027369.2-201ENST00000528030 440 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC004232.1-201ENST00000571388 208 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AC008507.3-201ENST00000585753 472 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.52□□□□□ -1.37
USP39Q53GS9 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AL359704.2-201ENST00000604335 521 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AL365400.2-201ENST00000605604 902 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AC025175.1-201ENST00000606482 759 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC068880.4-201ENST00000623082 495 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC092184.1-201ENST00000625042 715 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 TMEM161BP1-201ENST00000457388 1457 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC007485.2-201ENST00000623493 1667 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 CUBNP3-201ENST00000457461 1784 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC6.51□□□□□ -1.37
USP39Q53GS9 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
USP39Q53GS9 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.51□□□□□ -1.37
USP39Q53GS9 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
USP39Q53GS9 ZNF29P-201ENST00000225587 168 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 SKINT1L-201ENST00000401057 817 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 AL049545.1-201ENST00000401856 572 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 RPL5P20-201ENST00000403848 896 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC6.51□□□□□ -1.37
USP39Q53GS9 RN7SKP206-201ENST00000410823 293 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 AL024507.1-201ENST00000412741 274 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.51□□□□□ -1.37
USP39Q53GS9 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.51□□□□□ -1.37
USP39Q53GS9 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6.51□□□□□ -1.37
USP39Q53GS9 MTCYBP12-201ENST00000440559 1134 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.51□□□□□ -1.37
USP39Q53GS9 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.51□□□□□ -1.37
USP39Q53GS9 EIF2S2P2-201ENST00000447161 982 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 AC010468.1-201ENST00000461022 817 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AC104115.2-201ENST00000523026 687 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 TRIM77BP-201ENST00000524985 1119 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.51□□□□□ -1.37
USP39Q53GS9 HNRNPRP2-201ENST00000528421 743 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 NANOGNBP2-201ENST00000544753 553 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 OR4U1P-201ENST00000554958 912 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.51□□□□□ -1.37
USP39Q53GS9 CYCSP38-201ENST00000559840 322 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 MIR4509-3-201ENST00000578671 94 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 MIR4509-2-201ENST00000583920 94 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AC008521.2-201ENST00000591021 259 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.51□□□□□ -1.37
USP39Q53GS9 GAS5-AS1-201ENST00000602767 694 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 AC008536.1-201ENST00000602872 669 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AC231759.1-201ENST00000616455 597 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
USP39Q53GS9 MIR4509-1-201ENST00000618224 94 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AP000577.1-201ENST00000624366 878 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 AL590396.4-201ENST00000636779 956 ntBASIC6.51□□□□□ -1.37
USP39Q53GS9 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms