Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OFD1P15Y-201ENST00000411536 1392 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 AL355834.1-201ENST00000556602 3965 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 RNU6-386P-201ENST00000362650 107 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 MT-RNR1-201ENST00000389680 954 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 SDC4P-201ENST00000453285 601 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 RN7SL552P-201ENST00000462094 276 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 AC021006.1-201ENST00000489849 553 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 CYCSP25-201ENST00000525280 316 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 AC026898.1-201ENST00000586404 571 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 AL359091.2-201ENST00000609303 556 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 AL162574.2-201ENST00000614618 657 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 MIR6721-201ENST00000617181 87 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 AL929601.4-201ENST00000613011 1341 ntBASIC5.18□□□□□ -1.58
NKX3-1Q99801 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
NKX3-1Q99801 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
NKX3-1Q99801 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC022325.1-201ENST00000502748 2199 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 RNA5SP110-201ENST00000362638 115 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 Y_RNA.62-201ENST00000362840 99 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 SNORD1C-201ENST00000363315 78 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 U3.10-201ENST00000364459 214 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 CXADRP1-201ENST00000398098 1095 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 AL096829.1-201ENST00000413677 457 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 SETP9-201ENST00000423837 832 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC073410.1-201ENST00000435125 589 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 CUBNP2-201ENST00000443534 1139 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC093166.3-201ENST00000448785 303 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC135999.1-201ENST00000478962 479 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC106822.1-201ENST00000502647 526 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 HMGN1P16-201ENST00000508308 283 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 MAST4-IT1-201ENST00000514241 658 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 RNU6-1334P-201ENST00000516032 105 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 AL049779.3-201ENST00000557141 606 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 HMGN2P47-201ENST00000559378 272 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 268.8 ms