Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS35Q96QK1 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS35Q96QK1 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 OR7E25P-201ENST00000344844 931 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS35Q96QK1 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS35Q96QK1 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 AL050305.1-201ENST00000399993 1230 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 MIR1203-201ENST00000408812 85 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 AL035660.1-201ENST00000422041 222 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 RPL5P2-201ENST00000429598 854 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 RPS10P18-201ENST00000442662 495 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 AC094085.1-201ENST00000468914 584 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS35Q96QK1 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 TXNP4-201ENST00000575018 310 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 AC016839.1-201ENST00000578162 867 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 AC010487.1-201ENST00000594408 1172 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 AC069234.4-201ENST00000621276 412 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 AC022400.9-201ENST00000623633 273 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 AP003072.5-201ENST00000623872 773 ntBASIC5.85□□□□□ -1.47
VPS35Q96QK1 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS35Q96QK1 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS35Q96QK1 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS35Q96QK1 AL132656.3-201ENST00000606384 1595 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 OR5AQ1P-202ENST00000641257 1534 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 CASC19-260ENST00000641828 2001 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 PDZK1P1-202ENST00000425209 1350 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 MIR133A2-201ENST00000347538 102 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC023490.2-201ENST00000359859 470 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 HMGN1P20-201ENST00000411849 300 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC009506.2-201ENST00000420635 840 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 RPS12P17-201ENST00000438591 377 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 EIF5AP4-201ENST00000441206 465 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 PCNPP2-201ENST00000441651 455 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 ACA64.1-201ENST00000459171 127 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 snoU13.29-201ENST00000459370 104 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 RPL38P3-201ENST00000484463 213 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 RNA5SP271-201ENST00000516700 88 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC068305.2-201ENST00000550567 1205 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC091078.2-201ENST00000557145 559 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC007346.2-201ENST00000564816 892 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 COX6CP7-201ENST00000597056 208 ntBASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS35Q96QK1 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS35Q96QK1 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
VPS35Q96QK1 PARP4P2-201ENST00000446672 3326 ntBASIC5.84□□□□□ -1.48
VPS35Q96QK1 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms