Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS39Q96JC1 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS39Q96JC1 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS39Q96JC1 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS39Q96JC1 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS39Q96JC1 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AL445928.1-201ENST00000435545 222 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 RPL5P10-201ENST00000445207 894 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC073072.2-201ENST00000447425 348 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 PPIAP7-201ENST00000454070 489 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 RN7SL254P-201ENST00000460609 284 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 SNRPCP3-201ENST00000474888 476 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC092865.4-201ENST00000477936 615 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 RN7SL568P-201ENST00000493069 298 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC008629.2-201ENST00000503783 483 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 MIR2117-201ENST00000516780 80 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC116917.1-201ENST00000520558 305 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AP000620.1-201ENST00000527147 504 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AP003033.2-201ENST00000528901 805 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AL078601.3-201ENST00000573303 535 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC073333.2-201ENST00000603589 769 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 AL356608.1-201ENST00000610034 820 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC244100.4-201ENST00000617747 388 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC138627.1-204ENST00000641894 765 ntBASIC5.89□□□□□ -1.47
VPS39Q96JC1 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS39Q96JC1 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
VPS39Q96JC1 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS39Q96JC1 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS39Q96JC1 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS39Q96JC1 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 RNU6-249P-201ENST00000363016 102 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS39Q96JC1 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 SNORA79B-201ENST00000410557 148 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 METTL15P3-201ENST00000415522 1221 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 THEM7P-201ENST00000419556 672 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 CRIP1P1-201ENST00000427567 185 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 RPSAP32-201ENST00000432681 526 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC096775.1-201ENST00000437724 448 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 RPL12P39-201ENST00000455456 496 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC023245.1-201ENST00000468501 517 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 PDCL3P4-201ENST00000489621 720 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 RPL9P15-201ENST00000491096 532 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 OR7E99P-201ENST00000505750 922 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 AP000859.1-201ENST00000525536 307 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 OR4A41P-201ENST00000533053 928 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC025423.2-201ENST00000537570 439 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC138207.8-204ENST00000579588 527 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC012254.3-201ENST00000591183 2117 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC025857.2-201ENST00000602711 238 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AL133481.2-203ENST00000607558 139 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC073488.6-201ENST00000632293 754 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 FBXL21-201ENST00000297158 1305 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 AL355834.1-201ENST00000556602 3965 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS39Q96JC1 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS39Q96JC1 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS39Q96JC1 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 RBPJP7-201ENST00000442803 1447 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 RBPJP5-201ENST00000449433 1447 ntBASIC5.88□□□□□ -1.47
VPS39Q96JC1 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS39Q96JC1 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
VPS39Q96JC1 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS39Q96JC1 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS39Q96JC1 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS39Q96JC1 AC025470.1-201ENST00000510053 2032 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 133.3 ms