Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC009963.3-201ENST00000458090 486 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC104339.1-201ENST00000465478 348 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC105918.1-201ENST00000474399 838 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AL035690.1-201ENST00000490892 383 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 PSMA2P2-201ENST00000504319 686 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 RNA5SP473-201ENST00000516402 125 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 RNA5SP434-201ENST00000516647 121 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC020937.1-201ENST00000519677 1013 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC009879.1-201ENST00000520029 839 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC107958.1-201ENST00000556576 290 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 MIR4271-201ENST00000582451 67 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC245128.3-201ENST00000594721 748 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AL592494.3-201ENST00000609485 464 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC117490.2-201ENST00000610042 594 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 FAM27E2-201ENST00000619668 403 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 OR7A1P-202ENST00000641542 1158 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 HDAC1P2-201ENST00000453661 1398 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC114876.1-201ENST00000490962 1366 ntBASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
NUP54Q7Z3B4 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 RPL35AP31-201ENST00000418340 337 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 OR51A6P-201ENST00000418680 1004 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 Z84478.1-201ENST00000438230 1219 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 PPIAP7-201ENST00000454070 489 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 OR7E99P-201ENST00000505750 922 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 RPS27AP18-201ENST00000515536 459 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC011853.1-201ENST00000518911 454 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AP000620.1-201ENST00000527147 504 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC005000.1-201ENST00000536192 288 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC007494.1-201ENST00000562293 760 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC092332.1-201ENST00000563684 829 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC002310.3-201ENST00000569728 723 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC141002.1-201ENST00000607025 279 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC015922.4-201ENST00000612568 690 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AL118556.2-201ENST00000614375 824 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AL122125.1-201ENST00000616999 600 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AL590410.1-201ENST00000617925 333 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AL137067.2-201ENST00000621202 131 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC073592.6-201ENST00000624271 415 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC073593.1-201ENST00000624500 411 ntBASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.66□□□□□ -1.5
NUP54Q7Z3B4 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms