Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
RNF4P78317 Z68868.1-201ENST00000429048 544 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC6.65□□□□□ -1.34
RNF4P78317 RPL21P134-201ENST00000453468 483 ntBASIC6.65□□□□□ -1.34
RNF4P78317 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
RNF4P78317 RPLP0P1-201ENST00000457002 361 ntBASIC6.65□□□□□ -1.34
RNF4P78317 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.65□□□□□ -1.34
RNF4P78317 CBX5P1-201ENST00000468470 561 ntBASIC6.65□□□□□ -1.34
RNF4P78317 XACT-201ENST00000468762 497 ntTSL 5 BASIC6.65□□□□□ -1.34
RNF4P78317 RN7SL456P-201ENST00000469290 295 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AF305872.1-201ENST00000485217 471 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC074386.1-206ENST00000487102 761 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AL024509.2-201ENST00000493462 493 ntBASIC6.65□□□□□ -1.34
RNF4P78317 TECRP2-201ENST00000503270 928 ntBASIC6.65□□□□□ -1.34
RNF4P78317 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
RNF4P78317 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC6.65□□□□□ -1.34
RNF4P78317 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC6.65□□□□□ -1.34
RNF4P78317 BTG4P1-201ENST00000510421 183 ntBASIC6.65□□□□□ -1.34
RNF4P78317 PGAM4P2-201ENST00000512491 721 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC008837.2-201ENST00000513076 418 ntBASIC6.65□□□□□ -1.34
RNF4P78317 PRELID3BP4-201ENST00000515476 571 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
RNF4P78317 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC6.65□□□□□ -1.34
RNF4P78317 MTND4LP26-201ENST00000518144 282 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.65□□□□□ -1.34
RNF4P78317 NAP1L1P1-201ENST00000524793 1063 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC055860.1-201ENST00000525523 688 ntTSL 5 BASIC6.65□□□□□ -1.34
RNF4P78317 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
RNF4P78317 AP001646.2-201ENST00000528645 1156 ntBASIC6.65□□□□□ -1.34
RNF4P78317 OR9G2P-201ENST00000533326 880 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC6.65□□□□□ -1.34
RNF4P78317 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC6.65□□□□□ -1.34
RNF4P78317 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC6.65□□□□□ -1.34
RNF4P78317 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC6.65□□□□□ -1.34
RNF4P78317 FAM30C-201ENST00000561158 410 ntBASIC6.65□□□□□ -1.34
RNF4P78317 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC6.65□□□□□ -1.34
RNF4P78317 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC6.65□□□□□ -1.34
RNF4P78317 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC6.65□□□□□ -1.34
RNF4P78317 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC6.65□□□□□ -1.34
RNF4P78317 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC6.65□□□□□ -1.34
RNF4P78317 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC6.65□□□□□ -1.34
RNF4P78317 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC6.65□□□□□ -1.34
RNF4P78317 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC6.65□□□□□ -1.34
RNF4P78317 AC024085.1-201ENST00000604299 432 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC006270.3-201ENST00000605967 1036 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC108747.1-201ENST00000609508 535 ntBASIC6.65□□□□□ -1.34
RNF4P78317 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AL121782.1-201ENST00000611242 413 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AL031777.2-201ENST00000611953 196 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC008083.4-201ENST00000615076 444 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AL121985.3-201ENST00000620690 523 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC093909.6-201ENST00000624757 775 ntBASIC6.65□□□□□ -1.34
RNF4P78317 AC243725.1-201ENST00000637164 436 ntBASIC6.65□□□□□ -1.34
RNF4P78317 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
RNF4P78317 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
RNF4P78317 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
RNF4P78317 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.65□□□□□ -1.35
RNF4P78317 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.65□□□□□ -1.35
RNF4P78317 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
RNF4P78317 ZNF214-201ENST00000278314 2681 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
RNF4P78317 NT5C2-203ENST00000404739 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
RNF4P78317 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.65□□□□□ -1.35
RNF4P78317 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
RNF4P78317 EEF1A1P20-201ENST00000514852 1386 ntBASIC6.65□□□□□ -1.35
RNF4P78317 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.65□□□□□ -1.35
RNF4P78317 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
RNF4P78317 Z93929.1-201ENST00000418200 1475 ntBASIC6.65□□□□□ -1.35
RNF4P78317 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
RNF4P78317 CASC19-243ENST00000641588 1546 ntBASIC6.65□□□□□ -1.35
RNF4P78317 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
RNF4P78317 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
RNF4P78317 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
RNF4P78317 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.65□□□□□ -1.35
RNF4P78317 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC6.64□□□□□ -1.35
RNF4P78317 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
RNF4P78317 IL6STP1-201ENST00000346911 1020 ntBASIC6.64□□□□□ -1.35
RNF4P78317 YWHAZP4-201ENST00000392459 708 ntBASIC6.64□□□□□ -1.35
RNF4P78317 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 RNU2-16P-201ENST00000410712 136 ntBASIC6.64□□□□□ -1.35
RNF4P78317 USP9YP33-201ENST00000412220 421 ntBASIC6.64□□□□□ -1.35
RNF4P78317 MKX-AS1-201ENST00000412244 745 ntTSL 3 BASIC6.64□□□□□ -1.35
RNF4P78317 AL139135.1-201ENST00000412675 209 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AL662791.3-201ENST00000413771 776 ntBASIC6.64□□□□□ -1.35
RNF4P78317 CEACAMP8-201ENST00000413902 580 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC6.64□□□□□ -1.35
RNF4P78317 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC6.64□□□□□ -1.35
RNF4P78317 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 OR52S1P-201ENST00000427016 937 ntBASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms