Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC111188.2-201ENST00000529697 1387 ntBASIC7.28□□□□□ -1.24
LIG3P49916 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 AL136531.3-201ENST00000624378 3658 ntBASIC7.28□□□□□ -1.24
LIG3P49916 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
LIG3P49916 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC7.28□□□□□ -1.24
LIG3P49916 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 ACOD1-201ENST00000377462 2165 ntAPPRIS P2 TSL 5 BASIC7.27□□□□□ -1.24
LIG3P49916 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC7.27□□□□□ -1.24
LIG3P49916 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.24
LIG3P49916 EEF1A1P16-201ENST00000325349 1414 ntBASIC7.27□□□□□ -1.24
LIG3P49916 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
LIG3P49916 DYDC2-201ENST00000256039 1842 ntAPPRIS P3 TSL 2 BASIC7.27□□□□□ -1.25
LIG3P49916 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC7.27□□□□□ -1.25
LIG3P49916 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
LIG3P49916 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.25
LIG3P49916 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 RPL12P13-201ENST00000310055 497 ntBASIC7.27□□□□□ -1.25
LIG3P49916 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
LIG3P49916 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 RPS3AP5-201ENST00000389400 821 ntBASIC7.27□□□□□ -1.25
LIG3P49916 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 CHMP1B2P-201ENST00000399581 597 ntBASIC7.27□□□□□ -1.25
LIG3P49916 SNORA11D-201ENST00000408548 128 ntBASIC7.27□□□□□ -1.25
LIG3P49916 SNORA11E-201ENST00000408778 128 ntBASIC7.27□□□□□ -1.25
LIG3P49916 MOB4-205ENST00000409916 829 ntTSL 3 BASIC7.27□□□□□ -1.25
LIG3P49916 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC7.27□□□□□ -1.25
LIG3P49916 AL359633.1-201ENST00000421403 310 ntBASIC7.27□□□□□ -1.25
LIG3P49916 ZBTB8OSP2-201ENST00000423890 504 ntBASIC7.27□□□□□ -1.25
LIG3P49916 GSTA6P-201ENST00000424144 582 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AC073900.1-201ENST00000429766 776 ntBASIC7.27□□□□□ -1.25
LIG3P49916 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 AL360221.1-201ENST00000445989 335 ntBASIC7.27□□□□□ -1.25
LIG3P49916 HMGB1P48-201ENST00000446155 598 ntBASIC7.27□□□□□ -1.25
LIG3P49916 RPL12P26-201ENST00000452430 487 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AC097262.1-201ENST00000452559 548 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AC236972.4-201ENST00000458091 963 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AC026348.1-201ENST00000462549 1053 ntBASIC7.27□□□□□ -1.25
LIG3P49916 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
LIG3P49916 RNU6-759P-201ENST00000516740 103 ntBASIC7.27□□□□□ -1.25
LIG3P49916 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC7.27□□□□□ -1.25
LIG3P49916 IGLV1-62-201ENST00000518003 441 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC7.27□□□□□ -1.25
LIG3P49916 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC7.27□□□□□ -1.25
LIG3P49916 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC7.27□□□□□ -1.25
LIG3P49916 EEF1A1P17-201ENST00000547505 1275 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC7.27□□□□□ -1.25
LIG3P49916 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC7.27□□□□□ -1.25
LIG3P49916 RPSAP66-201ENST00000592196 606 ntBASIC7.27□□□□□ -1.25
LIG3P49916 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC7.27□□□□□ -1.25
LIG3P49916 AC009955.2-201ENST00000597288 542 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AL031985.2-201ENST00000600955 480 ntBASIC7.27□□□□□ -1.25
LIG3P49916 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC7.27□□□□□ -1.25
LIG3P49916 OR2BH1P-201ENST00000608850 864 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AC072039.2-201ENST00000608883 439 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AC027271.1-201ENST00000610270 610 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AC104073.3-201ENST00000610942 955 ntBASIC7.27□□□□□ -1.25
LIG3P49916 AC005277.2-201ENST00000617898 390 ntBASIC7.27□□□□□ -1.25
LIG3P49916 RPL23AP61-201ENST00000623642 466 ntBASIC7.27□□□□□ -1.25
LIG3P49916 LINC01232-205ENST00000630421 1002 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 EEF1A1P33-201ENST00000554413 1362 ntBASIC7.27□□□□□ -1.25
LIG3P49916 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC7.27□□□□□ -1.25
LIG3P49916 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC7.27□□□□□ -1.25
LIG3P49916 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
LIG3P49916 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC7.27□□□□□ -1.25
LIG3P49916 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC7.27□□□□□ -1.25
LIG3P49916 MFSD8-256ENST00000641949 1640 ntBASIC7.27□□□□□ -1.25
LIG3P49916 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
LIG3P49916 MTCO1P28-201ENST00000574177 1528 ntBASIC7.27□□□□□ -1.25
LIG3P49916 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC7.26□□□□□ -1.25
LIG3P49916 SGO1P2-201ENST00000429458 1589 ntBASIC7.26□□□□□ -1.25
LIG3P49916 MKI67P1-201ENST00000604297 1460 ntBASIC7.26□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms