| MUC1 | P15941 | BCORP1-203 | ENST00000513194 | 5093 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | CNGA1-202 | ENST00000402813 | 2867 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | MMAA-205 | ENST00000541599 | 1437 nt | TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AP005212.5-201 | ENST00000577614 | 3505 nt | TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL161756.3-201 | ENST00000641216 | 2071 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | TAF12-202 | ENST00000373824 | 1334 nt | APPRIS P1 TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | TCF12-214 | ENST00000559710 | 1314 nt | TSL 2 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | TMOD2-201 | ENST00000249700 | 9191 nt | APPRIS P1 TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | PSD3-204 | ENST00000440756 | 11690 nt | APPRIS ALT2 TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | U3.10-201 | ENST00000364459 | 214 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | RNA5SP187-201 | ENST00000384400 | 119 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | PTPN20-208 | ENST00000395727 | 790 nt | TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | RPA3-204 | ENST00000406109 | 434 nt | TSL 3 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | RNU2-18P-201 | ENST00000411224 | 162 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | MYL6P5-201 | ENST00000412707 | 459 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL512622.1-201 | ENST00000414106 | 481 nt | TSL 3 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | OSBPL10-AS1-202 | ENST00000418728 | 458 nt | TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | C14orf105-202 | ENST00000422976 | 1153 nt | TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL162727.2-201 | ENST00000428429 | 395 nt | TSL 3 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | PNKDP1-201 | ENST00000435914 | 430 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL353662.1-201 | ENST00000439099 | 327 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL035416.1-201 | ENST00000443012 | 767 nt | TSL 2 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | ZNF619P1-201 | ENST00000446539 | 752 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL021937.3-201 | ENST00000446543 | 361 nt | TSL 2 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL161722.1-201 | ENST00000446972 | 1032 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL590399.3-202 | ENST00000448491 | 495 nt | TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | C2orf80-206 | ENST00000451346 | 979 nt | TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC004594.1-201 | ENST00000482375 | 463 nt | TSL 3 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | CCDC11P1-201 | ENST00000503137 | 1162 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC011853.1-201 | ENST00000518911 | 454 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC109466.1-215 | ENST00000519750 | 516 nt | TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | FAU-203 | ENST00000525297 | 355 nt | TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | PIWIL4-203 | ENST00000537419 | 831 nt | TSL 2 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC006512.2-201 | ENST00000543250 | 486 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | MED21-206 | ENST00000546323 | 575 nt | TSL 3 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC089998.2-201 | ENST00000551856 | 277 nt | TSL 3 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC023906.3-201 | ENST00000559825 | 874 nt | TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC009852.2-201 | ENST00000567898 | 485 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC087501.3-201 | ENST00000576477 | 513 nt | TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | SETP3-201 | ENST00000581726 | 813 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | LINC01198-204 | ENST00000594153 | 552 nt | TSL 3 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | SNHG8-202 | ENST00000602483 | 309 nt | TSL 3 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL353804.2-201 | ENST00000603360 | 347 nt | TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC092266.1-201 | ENST00000610958 | 165 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | CCL23-201 | ENST00000612516 | 569 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | LINC02536-201 | ENST00000625799 | 625 nt | TSL 3 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC073488.3-201 | ENST00000631611 | 778 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | MAPK10-350 | ENST00000641777 | 965 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | HIF1AN-201 | ENST00000299163 | 13011 nt | APPRIS P1 TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | RYR3-201 | ENST00000389232 | 15552 nt | APPRIS ALT2 TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | PPFIBP1-201 | ENST00000228425 | 5933 nt | APPRIS P1 TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | CRISP1-204 | ENST00000507853 | 1793 nt | TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | CHMP1B2P-202 | ENST00000614414 | 6813 nt | TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | RYR3-208 | ENST00000622037 | 15564 nt | APPRIS ALT2 TSL 5 BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | GNL2P1-201 | ENST00000451274 | 2190 nt | BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | RABGAP1L-208 | ENST00000392064 | 6282 nt | TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | PHC3-217 | ENST00000497658 | 2087 nt | TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | PLCH1-202 | ENST00000340059 | 6168 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.08 | □□□□□ -1.6 | | |
| MUC1 | P15941 | ANGPT1-205 | ENST00000520052 | 1523 nt | TSL 5 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC008163.1-201 | ENST00000636281 | 1455 nt | TSL 5 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | PEX5L-202 | ENST00000392649 | 8540 nt | APPRIS ALT2 TSL 5 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | PMS2-203 | ENST00000382321 | 1386 nt | TSL 1 (best) BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | BLZF1-203 | ENST00000367808 | 2749 nt | APPRIS P1 TSL 1 (best) BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | CPED1-203 | ENST00000423795 | 2189 nt | TSL 1 (best) BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | GART-205 | ENST00000381839 | 3469 nt | APPRIS P1 TSL 1 (best) BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | SEMA3A-201 | ENST00000265362 | 8225 nt | APPRIS P1 TSL 1 (best) BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | C3orf14-201 | ENST00000232519 | 690 nt | APPRIS P1 TSL 3 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | FCER1G-201 | ENST00000289902 | 591 nt | APPRIS P1 TSL 1 (best) BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | COX6B1P3-201 | ENST00000312310 | 260 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | OR1D2-201 | ENST00000331459 | 939 nt | APPRIS P1 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | RNA5SP110-201 | ENST00000362638 | 115 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | SNORA51.9-201 | ENST00000384295 | 124 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | GAS5-202 | ENST00000414075 | 413 nt | TSL 2 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC022173.1-201 | ENST00000418554 | 577 nt | TSL 4 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | LINC01114-201 | ENST00000421071 | 482 nt | TSL 3 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL359636.1-201 | ENST00000433572 | 522 nt | TSL 3 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC007679.3-201 | ENST00000434035 | 414 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL731534.1-201 | ENST00000434711 | 269 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | GUSBP6-201 | ENST00000434932 | 640 nt | TSL 1 (best) BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | RPS3AP38-201 | ENST00000435889 | 763 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC023141.3-201 | ENST00000436698 | 278 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL663074.2-201 | ENST00000440621 | 479 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | CFL1P4-201 | ENST00000451536 | 498 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC068228.1-201 | ENST00000461723 | 211 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC104339.1-201 | ENST00000465478 | 348 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC098847.1-201 | ENST00000473094 | 348 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | RN7SL741P-201 | ENST00000482473 | 289 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC124945.1-201 | ENST00000485133 | 188 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | APOBEC3AP1-201 | ENST00000511396 | 287 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC027343.2-201 | ENST00000513219 | 343 nt | TSL 3 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | HAND2-AS1-233 | ENST00000515345 | 797 nt | TSL 3 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | RN7SKP70-201 | ENST00000516655 | 271 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | OR4A42P-201 | ENST00000531397 | 938 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC002056.2-201 | ENST00000532913 | 284 nt | TSL 5 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | C3orf14-207 | ENST00000542214 | 768 nt | APPRIS P1 TSL 1 (best) BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AL135838.1-201 | ENST00000556080 | 235 nt | TSL 3 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC127024.4-201 | ENST00000585212 | 308 nt | TSL 5 BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | LINC00907-202 | ENST00000585639 | 915 nt | TSL 1 (best) BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | AC090236.2-201 | ENST00000587933 | 1101 nt | BASIC | 5.07 | □□□□□ -1.6 | | |
| MUC1 | P15941 | TTN-AS1-226 | ENST00000588716 | 604 nt | TSL 5 BASIC | 5.07 | □□□□□ -1.6 | | |