Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 GTF3AP6-201ENST00000432585 986 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AC005017.1-201ENST00000482002 490 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 RPL38P3-201ENST00000484463 213 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AC113367.2-201ENST00000505749 160 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 RNA5SP473-201ENST00000516402 125 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 OR7E158P-201ENST00000524483 910 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 RPL41P2-201ENST00000544920 409 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AL583832.1-201ENST00000603227 784 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AC012368.3-201ENST00000604190 219 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AL353729.2-201ENST00000605859 1249 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AC068726.1-201ENST00000610993 341 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 MIR6133-201ENST00000617057 108 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AL445670.1-201ENST00000618889 801 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 AC138965.3-201ENST00000623875 498 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 TCP11X1-202ENST00000622971 1372 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 SNORA70.6-201ENST00000383934 134 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AL358178.1-201ENST00000407698 397 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 RPS7P8-201ENST00000418311 581 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AL360013.1-201ENST00000419031 858 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 RNGTTP1-201ENST00000420965 728 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC104164.1-201ENST00000460282 590 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 RN7SL170P-201ENST00000487098 295 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 GM2AP2-201ENST00000491764 562 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 B4GALNT2P1-201ENST00000508857 307 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC026782.2-201ENST00000510845 636 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 RNA5SP434-201ENST00000516647 121 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 NATP-201ENST00000523491 878 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 MIR4660-201ENST00000583549 74 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 NANOGP3-201ENST00000605855 286 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 uc_338.29-201ENST00000615099 168 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AC073592.6-201ENST00000624271 415 ntBASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
CCDC112Q8NEF3 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC112Q8NEF3 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms