Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
PKNOX1P55347 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 RN7SKP146-201ENST00000410242 334 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.69□□□□□ -1.5
PKNOX1P55347 KIF4CP-201ENST00000422742 1279 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC5.69□□□□□ -1.5
PKNOX1P55347 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.69□□□□□ -1.5
PKNOX1P55347 AC015983.1-201ENST00000441577 373 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 BMS1P10-201ENST00000443754 1120 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 MED28P3-201ENST00000444288 531 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.69□□□□□ -1.5
PKNOX1P55347 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 RBMY2BP-202ENST00000451071 1156 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
PKNOX1P55347 AC113367.2-201ENST00000505749 160 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.69□□□□□ -1.5
PKNOX1P55347 GLUD1P3-202ENST00000508551 200 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC5.69□□□□□ -1.5
PKNOX1P55347 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.69□□□□□ -1.5
PKNOX1P55347 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.69□□□□□ -1.5
PKNOX1P55347 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.69□□□□□ -1.5
PKNOX1P55347 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.69□□□□□ -1.5
PKNOX1P55347 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.69□□□□□ -1.5
PKNOX1P55347 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.69□□□□□ -1.5
PKNOX1P55347 GARSP1-201ENST00000570895 719 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 AC004232.2-201ENST00000574245 821 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 NQO2-209ENST00000606474 470 ntTSL 3 BASIC5.69□□□□□ -1.5
PKNOX1P55347 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 AL139099.4-201ENST00000614802 114 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC5.69□□□□□ -1.5
PKNOX1P55347 AC073488.6-201ENST00000632293 754 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.69□□□□□ -1.5
PKNOX1P55347 AC093671.1-201ENST00000624981 2929 ntBASIC5.69□□□□□ -1.5
PKNOX1P55347 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.69□□□□□ -1.5
PKNOX1P55347 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
PKNOX1P55347 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PKNOX1P55347 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.68□□□□□ -1.5
PKNOX1P55347 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PKNOX1P55347 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
PKNOX1P55347 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.68□□□□□ -1.5
PKNOX1P55347 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.68□□□□□ -1.5
PKNOX1P55347 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.68□□□□□ -1.5
PKNOX1P55347 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.68□□□□□ -1.5
PKNOX1P55347 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PKNOX1P55347 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
PKNOX1P55347 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
PKNOX1P55347 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
PKNOX1P55347 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
PKNOX1P55347 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
PKNOX1P55347 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PKNOX1P55347 RN7SKP77-201ENST00000363261 353 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
PKNOX1P55347 YWHAZP6-201ENST00000399764 738 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.68□□□□□ -1.5
PKNOX1P55347 RNGTTP1-201ENST00000420965 728 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.68□□□□□ -1.5
PKNOX1P55347 AC108479.1-201ENST00000431142 427 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.68□□□□□ -1.5
PKNOX1P55347 AC023141.8-201ENST00000442554 208 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 AC004129.2-201ENST00000457229 287 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC5.68□□□□□ -1.5
PKNOX1P55347 PRMT5P1-201ENST00000514351 598 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 RNA5SP441-201ENST00000516809 88 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 AP001000.1-201ENST00000526843 742 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 GTF2IP11-201ENST00000526931 420 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.68□□□□□ -1.5
PKNOX1P55347 AC084824.2-201ENST00000548906 345 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.68□□□□□ -1.5
PKNOX1P55347 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.68□□□□□ -1.5
PKNOX1P55347 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.68□□□□□ -1.5
PKNOX1P55347 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.68□□□□□ -1.5
PKNOX1P55347 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
PKNOX1P55347 AC068768.2-201ENST00000602352 343 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 AL049840.6-201ENST00000604583 345 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.68□□□□□ -1.5
PKNOX1P55347 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
PKNOX1P55347 AC015819.1-201ENST00000613588 663 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.68□□□□□ -1.5
PKNOX1P55347 SGO1-AS1-206ENST00000635369 442 ntTSL 5 BASIC5.68□□□□□ -1.5
PKNOX1P55347 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
PKNOX1P55347 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.68□□□□□ -1.5
PKNOX1P55347 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.68□□□□□ -1.5
PKNOX1P55347 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
PKNOX1P55347 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.68□□□□□ -1.5
PKNOX1P55347 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
PKNOX1P55347 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PKNOX1P55347 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PKNOX1P55347 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
PKNOX1P55347 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PKNOX1P55347 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.67□□□□□ -1.5
PKNOX1P55347 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PKNOX1P55347 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms