Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 ZNF402P-201ENST00000404435 3100 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 AC053481.2-202ENST00000582394 1500 ntBASIC7.68□□□□□ -1.18
CCDC39Q9UFE4 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 Z97989.1-201ENST00000531702 2421 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 C1orf162-202ENST00000369718 915 ntAPPRIS ALT2 TSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 RNU6-906P-201ENST00000384700 70 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AL356057.1-202ENST00000402263 756 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 RN7SKP117-201ENST00000410175 264 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 RNU6-564P-201ENST00000410983 104 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 UBE2V1P11-201ENST00000411559 285 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 OR5AC1-201ENST00000429239 925 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 PUDPP2-201ENST00000431423 643 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC005345.1-201ENST00000431868 217 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 MRPS21P3-201ENST00000436696 262 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AL139156.3-201ENST00000454802 394 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 RN7SL492P-201ENST00000460700 295 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC093827.1-201ENST00000480094 861 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 SUMO2P5-201ENST00000506790 245 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 MGST2-204ENST00000506797 634 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 RPL7L1P7-201ENST00000509986 724 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC134698.1-201ENST00000511619 643 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 IGKV1D-32-201ENST00000517449 318 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AP003066.2-201ENST00000529375 555 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 MIR4800-201ENST00000537353 80 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 RBM7-208ENST00000545678 867 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 DUXAP6-201ENST00000553858 601 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 CTSLP2-201ENST00000580501 394 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC005244.1-201ENST00000582566 339 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC097467.4-201ENST00000605504 141 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 RNU6-1192P-201ENST00000612197 107 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 RNU6-489P-201ENST00000618289 107 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC005753.1-201ENST00000623837 618 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC079298.2-201ENST00000623885 459 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 OR8B1P-202ENST00000641132 1178 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 AC110792.3-201ENST00000595906 1614 ntBASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
CCDC39Q9UFE4 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC006213.6-201ENST00000623722 4179 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 146.2 ms