Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC099521.1-201ENST00000482557 334 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 NENFP3-201ENST00000503735 313 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 SNORD46.2-201ENST00000516021 102 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 MIR4310-201ENST00000582950 57 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC015802.2-201ENST00000589690 189 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AP003072.5-201ENST00000623872 773 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC132825.8-201ENST00000640783 297 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AL022323.4-201ENST00000623980 13120 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AL357752.1-201ENST00000412817 349 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC127526.2-201ENST00000426436 775 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 USP24P1-201ENST00000433802 779 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 BTG3P1-201ENST00000435859 716 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC096775.1-201ENST00000437724 448 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AL390879.1-201ENST00000439143 386 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 RPL12P11-201ENST00000439970 501 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 OSTCP1-201ENST00000455507 450 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 RPS17P15-201ENST00000475609 349 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC006539.1-201ENST00000481419 501 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC022826.1-201ENST00000519383 805 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 MAPK10-350ENST00000641777 965 ntBASIC5.9□□□□□ -1.46
LHX3Q9UBR4 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.9□□□□□ -1.46
LHX3Q9UBR4 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.9□□□□□ -1.47
LHX3Q9UBR4 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
LHX3Q9UBR4 MFSD8-219ENST00000641228 2559 ntBASIC5.9□□□□□ -1.47
LHX3Q9UBR4 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
LHX3Q9UBR4 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.9□□□□□ -1.47
LHX3Q9UBR4 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
LHX3Q9UBR4 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
LHX3Q9UBR4 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
LHX3Q9UBR4 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
LHX3Q9UBR4 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 RNA5SP510-201ENST00000364697 99 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 RN7SKP78-201ENST00000364711 318 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 RN7SKP292-201ENST00000365522 317 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 AL451142.1-201ENST00000375867 775 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 AK4P4-201ENST00000419465 646 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 MTND6P12-201ENST00000428247 522 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 RPL23AP19-201ENST00000436229 369 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 AC007998.1-201ENST00000474156 672 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms