Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DYNLL1P1-201ENST00000595442 269 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 WBP1LP12-201ENST00000604449 331 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC117490.2-201ENST00000610042 594 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AL136097.3-201ENST00000611097 505 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 uc_338.29-201ENST00000615099 168 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC009120.7-201ENST00000623452 780 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 MAPK10-350ENST00000641777 965 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC012078.1-201ENST00000405035 1646 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AL161912.4-201ENST00000623889 2468 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 KYNUP3-201ENST00000574386 1341 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AL589826.1-201ENST00000340697 249 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 RN7SKP171-201ENST00000364417 303 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 SNORA77.2-201ENST00000408571 112 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AL390879.1-201ENST00000439143 386 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AL512593.1-201ENST00000444758 779 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC097359.1-201ENST00000447946 463 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AL356390.1-201ENST00000455684 397 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 OR2A3P-201ENST00000493774 953 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC008429.4-201ENST00000521201 182 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC244502.2-201ENST00000543361 851 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC008055.1-201ENST00000547032 609 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 RN7SL230P-201ENST00000580835 303 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC063977.7-201ENST00000594454 337 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC012467.1-201ENST00000607740 256 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC010998.3-201ENST00000613871 631 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AL122023.1-201ENST00000622847 530 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AL139254.3-201ENST00000641097 674 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AL596275.2-207ENST00000641188 675 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NKX3-1Q99801 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.25□□□□□ -1.57
NKX3-1Q99801 AC026523.2-201ENST00000625039 7739 ntBASIC5.25□□□□□ -1.57
NKX3-1Q99801 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 MIR621-201ENST00000384919 96 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 RAB5CP1-201ENST00000395972 580 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC019070.1-201ENST00000415008 1024 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 AL360013.1-201ENST00000419031 858 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 149.4 ms