Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AL157359.3-201ENST00000623771 217 ntBASIC8.21□□□□□ -1.1
HLA-CQ95604 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC8.21□□□□□ -1.1
HLA-CQ95604 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC8.21□□□□□ -1.1
HLA-CQ95604 PREPL-202ENST00000378511 2315 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HLA-CQ95604 HHAT-203ENST00000367010 3626 ntAPPRIS P1 TSL 2 BASIC8.21□□□□□ -1.1
HLA-CQ95604 C1QTNF3-AMACR-201ENST00000382079 3424 ntAPPRIS P1 TSL 2 BASIC8.21□□□□□ -1.1
HLA-CQ95604 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
HLA-CQ95604 LUCAT1-203ENST00000513626 2672 ntTSL 2 BASIC8.21□□□□□ -1.1
HLA-CQ95604 AL031985.3-201ENST00000565390 2449 ntBASIC8.21□□□□□ -1.1
HLA-CQ95604 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HLA-CQ95604 MAPK10-312ENST00000641391 2488 ntAPPRIS P2 BASIC8.21□□□□□ -1.1
HLA-CQ95604 MAPK10-378ENST00000642009 2463 ntAPPRIS P2 BASIC8.21□□□□□ -1.1
HLA-CQ95604 ENOX1-AS1-201ENST00000444442 3907 ntTSL 5 BASIC8.21□□□□□ -1.1
HLA-CQ95604 AC068044.1-201ENST00000441585 1978 ntBASIC8.21□□□□□ -1.1
HLA-CQ95604 ADGRE3-201ENST00000253673 2254 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 NAP1L3-202ENST00000475430 2555 ntAPPRIS ALT2 TSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 ZNF101P1-201ENST00000435701 1720 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 CALML4-208ENST00000540479 4603 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 PLPPR1-202ENST00000395056 2318 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 AC100871.1-201ENST00000507871 1456 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 FARSBP1-201ENST00000435808 1778 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 SLC5A1-201ENST00000266088 5061 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 PEG10-202ENST00000482108 6618 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 TEX11-203ENST00000374333 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 CENPL-201ENST00000345664 1847 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 TMEM236-201ENST00000377495 5464 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 NAA16-201ENST00000379406 4347 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 ANKRD20A11P-206ENST00000451663 3717 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 RNU6-845P-201ENST00000362578 103 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 RNU6-723P-201ENST00000383973 107 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 RNVU1-15-201ENST00000384476 165 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 MIR323B-201ENST00000385269 82 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 TMSB4XP8-201ENST00000402089 135 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AL080285.1-201ENST00000404225 984 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-CQ95604 AMD1P2-201ENST00000412936 992 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 TMSB4XP6-201ENST00000415187 135 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-CQ95604 AL157884.1-201ENST00000424561 454 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 TMSB4XP1-201ENST00000424567 135 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 HMGA1P4-201ENST00000428643 334 ntTSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-CQ95604 PPIAP17-201ENST00000438507 471 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AL049733.1-201ENST00000440178 603 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AL512605.1-202ENST00000441919 381 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AL606490.1-201ENST00000452266 765 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 FAM172BP-201ENST00000487497 1089 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 RPL39P36-201ENST00000490784 156 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AC012613.1-202ENST00000512647 424 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-CQ95604 AC108064.1-201ENST00000513791 460 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AC068898.2-201ENST00000514425 597 ntTSL 4 BASIC8.2□□□□□ -1.1
HLA-CQ95604 RNU6-1308P-201ENST00000516817 103 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 Y_RNA.704-201ENST00000516851 102 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC8.2□□□□□ -1.1
HLA-CQ95604 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC8.2□□□□□ -1.1
HLA-CQ95604 OR4A12P-201ENST00000530847 918 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 ACER3-213ENST00000533873 929 ntTSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 AC125612.1-201ENST00000547580 377 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-CQ95604 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-CQ95604 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-CQ95604 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC8.2□□□□□ -1.1
HLA-CQ95604 TTN-AS1-215ENST00000585451 949 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-CQ95604 OR5AH1P-201ENST00000595968 283 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-CQ95604 Metazoa_SRP.167-201ENST00000614947 260 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AC093591.3-201ENST00000634516 308 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 TMEM161B-201ENST00000296595 2594 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 UGT2B7-203ENST00000508661 1633 ntTSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 STON2-201ENST00000267540 2977 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 EEF1A1P42-201ENST00000613436 1331 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AL354740.1-201ENST00000586726 2681 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-CQ95604 MAPK10-386ENST00000642038 2354 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 ZSCAN26-206ENST00000619937 2729 ntAPPRIS ALT1 TSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 AL359091.1-201ENST00000449048 1734 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 AC015689.2-201ENST00000528172 1738 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 ZNF888-202ENST00000638862 4195 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
HLA-CQ95604 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 ACER3-212ENST00000532485 7378 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 GABRE-201ENST00000370328 3152 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 KCNE1-206ENST00000432085 3184 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 PWAR5-201ENST00000624480 3180 ntBASIC8.2□□□□□ -1.1
HLA-CQ95604 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC8.2□□□□□ -1.1
HLA-CQ95604 OR7A17-203ENST00000642123 3565 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
HLA-CQ95604 HOXA1-201ENST00000343060 2517 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-CQ95604 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-CQ95604 LHFPL3-AS2-202ENST00000631061 1832 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
HLA-CQ95604 CDRT1-203ENST00000395667 3016 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
HLA-CQ95604 CCT4P2-201ENST00000233836 1548 ntBASIC8.19□□□□□ -1.1
HLA-CQ95604 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
HLA-CQ95604 LRRC4C-203ENST00000528697 2650 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-CQ95604 ERV3-1-201ENST00000394323 2719 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms