Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 USP9YP1-201ENST00000513521 1002 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 ATP5LP3-201ENST00000514223 304 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 RNU6-943P-201ENST00000516960 98 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 RPA2P3-201ENST00000533268 770 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AC135626.1-201ENST00000556983 435 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 ZNF322P1-201ENST00000568013 1209 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AL137246.1-201ENST00000607072 977 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AC069234.4-201ENST00000621276 412 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AL136228.1-201ENST00000622221 319 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AL513548.1-201ENST00000562904 1724 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
HDDC3Q8N4P3 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
HDDC3Q8N4P3 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.15□□□□□ -1.43
HDDC3Q8N4P3 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.43
HDDC3Q8N4P3 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
HDDC3Q8N4P3 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.15□□□□□ -1.43
HDDC3Q8N4P3 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
HDDC3Q8N4P3 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC6.15□□□□□ -1.43
HDDC3Q8N4P3 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AC092724.1-201ENST00000624623 3397 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 NCOA4P2-201ENST00000340589 1813 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AC005618.1-201ENST00000606901 3148 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AL589994.1-201ENST00000404962 340 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AL451136.1-201ENST00000435399 325 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AC092865.4-201ENST00000477936 615 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AC008429.4-201ENST00000521201 182 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 NPM1P5-201ENST00000557228 838 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 MIR3176-201ENST00000582210 90 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AC141002.1-201ENST00000607025 279 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AL137067.2-201ENST00000621202 131 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 AC053481.2-202ENST00000582394 1500 ntBASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.14□□□□□ -1.43
HDDC3Q8N4P3 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 OFD1P17-201ENST00000437639 3018 ntBASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 BX510359.3-201ENST00000422168 306 ntBASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 MRPS21P3-201ENST00000436696 262 ntBASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 AC064862.4-201ENST00000442180 334 ntBASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 AC073594.1-201ENST00000462065 364 ntBASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 RN7SL193P-201ENST00000491708 276 ntBASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC6.13□□□□□ -1.43
HDDC3Q8N4P3 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms