Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
HSPG2P98160 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC3.43□□□□□ -1.86
HSPG2P98160 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 NSD2-205ENST00000382892 7706 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC3.43□□□□□ -1.86
HSPG2P98160 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 AC104118.1-201ENST00000607625 1589 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 MYH4-201ENST00000255381 6016 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 RPL32P23-201ENST00000397237 405 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.43□□□□□ -1.86
HSPG2P98160 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC3.43□□□□□ -1.86
HSPG2P98160 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 EIF2S2P2-201ENST00000447161 982 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 AC097484.1-201ENST00000471148 389 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC3.43□□□□□ -1.86
HSPG2P98160 AC092490.3-201ENST00000545370 572 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC3.43□□□□□ -1.86
HSPG2P98160 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC3.43□□□□□ -1.86
HSPG2P98160 RPL26P30-202ENST00000602923 645 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 AL391358.1-201ENST00000605342 190 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 AL445423.1-201ENST00000609941 536 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC3.43□□□□□ -1.86
HSPG2P98160 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC3.43□□□□□ -1.86
HSPG2P98160 MFSD8-239ENST00000641590 2479 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC3.43□□□□□ -1.86
HSPG2P98160 ITM2B-202ENST00000378565 10137 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 BCL2L13-203ENST00000355028 4458 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
HSPG2P98160 ATP7B-206ENST00000448424 6404 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 OR8B9P-202ENST00000642028 5216 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC3.43□□□□□ -1.86
HSPG2P98160 MIR133B-201ENST00000362210 119 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 SNORA11.2-201ENST00000408318 127 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC3.43□□□□□ -1.86
HSPG2P98160 MORF4L1P5-201ENST00000433352 961 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC3.43□□□□□ -1.86
HSPG2P98160 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC3.43□□□□□ -1.86
HSPG2P98160 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC3.43□□□□□ -1.86
HSPG2P98160 AL603882.1-201ENST00000463059 681 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC3.43□□□□□ -1.86
HSPG2P98160 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC3.43□□□□□ -1.86
HSPG2P98160 AC008147.3-201ENST00000548666 354 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC3.43□□□□□ -1.86
HSPG2P98160 MIR4260-201ENST00000583107 67 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 SSX9-202ENST00000608568 580 ntTSL 4 BASIC3.43□□□□□ -1.86
HSPG2P98160 AL359757.1-201ENST00000623176 255 ntBASIC3.43□□□□□ -1.86
HSPG2P98160 ST8SIA3-201ENST00000324000 11833 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 CPEB3-202ENST00000412050 7664 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC3.43□□□□□ -1.86
HSPG2P98160 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
HSPG2P98160 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
HSPG2P98160 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HSPG2P98160 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC3.42□□□□□ -1.86
HSPG2P98160 TMCC1-202ENST00000426664 5484 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 RPL5P25-201ENST00000441148 775 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC3.42□□□□□ -1.86
HSPG2P98160 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.42□□□□□ -1.86
HSPG2P98160 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.42□□□□□ -1.86
HSPG2P98160 AP001781.1-201ENST00000530977 207 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 UBE2FP2-201ENST00000566646 462 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
HSPG2P98160 AC005084.1-201ENST00000605160 304 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC3.42□□□□□ -1.86
HSPG2P98160 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 DOCK8-209ENST00000469391 6386 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 ARHGEF7-203ENST00000375723 4957 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
HSPG2P98160 MGAT4A-202ENST00000393487 8382 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC3.42□□□□□ -1.86
HSPG2P98160 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 EMC1-207ENST00000477853 6664 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 ZBTB21-203ENST00000398499 5806 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC3.42□□□□□ -1.86
HSPG2P98160 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 AC068287.1-201ENST00000430283 295 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 RPS3AP38-201ENST00000435889 763 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 AC015983.1-201ENST00000441577 373 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms