Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SMARCA1P28370 ZNF619P1-201ENST00000446539 752 ntBASIC7.06□□□□□ -1.28
SMARCA1P28370 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC7.06□□□□□ -1.28
SMARCA1P28370 RAB28P2-201ENST00000454299 641 ntBASIC7.06□□□□□ -1.28
SMARCA1P28370 AC015908.1-201ENST00000478739 476 ntBASIC7.06□□□□□ -1.28
SMARCA1P28370 MTND3P24-201ENST00000506306 329 ntBASIC7.06□□□□□ -1.28
SMARCA1P28370 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC7.06□□□□□ -1.28
SMARCA1P28370 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC7.06□□□□□ -1.28
SMARCA1P28370 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC7.06□□□□□ -1.28
SMARCA1P28370 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC7.06□□□□□ -1.28
SMARCA1P28370 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC7.06□□□□□ -1.28
SMARCA1P28370 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC7.06□□□□□ -1.28
SMARCA1P28370 AC134669.1-201ENST00000581275 672 ntBASIC7.06□□□□□ -1.28
SMARCA1P28370 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC7.06□□□□□ -1.28
SMARCA1P28370 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC7.06□□□□□ -1.28
SMARCA1P28370 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC7.06□□□□□ -1.28
SMARCA1P28370 AC027334.1-201ENST00000603257 310 ntBASIC7.06□□□□□ -1.28
SMARCA1P28370 AL355816.2-201ENST00000610049 647 ntBASIC7.06□□□□□ -1.28
SMARCA1P28370 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC7.06□□□□□ -1.28
SMARCA1P28370 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
SMARCA1P28370 ING3-204ENST00000431467 1447 ntTSL 2 BASIC7.06□□□□□ -1.28
SMARCA1P28370 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC7.06□□□□□ -1.28
SMARCA1P28370 AC140479.2-201ENST00000421567 3130 ntBASIC7.06□□□□□ -1.28
SMARCA1P28370 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SMARCA1P28370 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SMARCA1P28370 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SMARCA1P28370 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC7.06□□□□□ -1.28
SMARCA1P28370 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC7.06□□□□□ -1.28
SMARCA1P28370 AC016583.1-201ENST00000624221 2431 ntBASIC7.06□□□□□ -1.28
SMARCA1P28370 AC009779.8-201ENST00000641684 4384 ntBASIC7.06□□□□□ -1.28
SMARCA1P28370 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SMARCA1P28370 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC7.05□□□□□ -1.28
SMARCA1P28370 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
SMARCA1P28370 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
SMARCA1P28370 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC7.05□□□□□ -1.28
SMARCA1P28370 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SMARCA1P28370 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SMARCA1P28370 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC7.05□□□□□ -1.28
SMARCA1P28370 IFIT1P1-201ENST00000400497 1449 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
SMARCA1P28370 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SMARCA1P28370 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SMARCA1P28370 EEF1B2P8-201ENST00000414101 671 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AC017078.1-201ENST00000416146 368 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 GTF3AP1-201ENST00000416942 1004 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 RPS17P17-201ENST00000419392 409 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SMARCA1P28370 ATP5A1P8-201ENST00000423669 1291 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AMYP1-201ENST00000440059 1023 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC7.05□□□□□ -1.28
SMARCA1P28370 AC112187.1-201ENST00000455837 479 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AC068228.1-201ENST00000461723 211 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AC023194.2-201ENST00000465398 406 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 RPL23AP40-201ENST00000487630 390 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AC008429.4-201ENST00000521201 182 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 LDHC-205ENST00000537486 583 ntTSL 5 BASIC7.05□□□□□ -1.28
SMARCA1P28370 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC7.05□□□□□ -1.28
SMARCA1P28370 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC7.05□□□□□ -1.28
SMARCA1P28370 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC7.05□□□□□ -1.28
SMARCA1P28370 MTND2P17-201ENST00000550281 688 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 RPA2P1-201ENST00000556557 721 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC7.05□□□□□ -1.28
SMARCA1P28370 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC7.05□□□□□ -1.28
SMARCA1P28370 RNU4ATAC-201ENST00000580972 127 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AC090236.2-201ENST00000587933 1101 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AL499605.1-201ENST00000604628 403 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AL139022.2-201ENST00000606934 443 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AC004801.6-201ENST00000616571 978 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AC024884.1-201ENST00000620583 399 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 AC006453.5-201ENST00000636451 619 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC7.05□□□□□ -1.28
SMARCA1P28370 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
SMARCA1P28370 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC7.05□□□□□ -1.28
SMARCA1P28370 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC7.05□□□□□ -1.28
SMARCA1P28370 QRSL1P1-201ENST00000400977 1540 ntBASIC7.05□□□□□ -1.28
SMARCA1P28370 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
SMARCA1P28370 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SMARCA1P28370 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SMARCA1P28370 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC7.05□□□□□ -1.28
SMARCA1P28370 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SMARCA1P28370 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC7.04□□□□□ -1.28
SMARCA1P28370 LRRC37A16P-202ENST00000586022 3725 ntBASIC7.04□□□□□ -1.28
SMARCA1P28370 MR1-209ENST00000617803 7584 ntTSL 5 BASIC7.04□□□□□ -1.28
SMARCA1P28370 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC7.04□□□□□ -1.28
SMARCA1P28370 FGG-201ENST00000336098 1659 ntTSL 2 BASIC7.04□□□□□ -1.28
SMARCA1P28370 GNL2P1-201ENST00000451274 2190 ntBASIC7.04□□□□□ -1.28
SMARCA1P28370 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 RN7SKP275-201ENST00000364626 301 ntBASIC7.04□□□□□ -1.28
SMARCA1P28370 MIR130B-202ENST00000385018 82 ntBASIC7.04□□□□□ -1.28
SMARCA1P28370 AL132875.1-201ENST00000403623 949 ntBASIC7.04□□□□□ -1.28
SMARCA1P28370 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC7.04□□□□□ -1.28
SMARCA1P28370 RN7SKP166-201ENST00000410812 305 ntBASIC7.04□□□□□ -1.28
SMARCA1P28370 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC7.04□□□□□ -1.28
SMARCA1P28370 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC7.04□□□□□ -1.28
SMARCA1P28370 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC7.04□□□□□ -1.28
SMARCA1P28370 ATP6V1E1P1-201ENST00000439215 681 ntBASIC7.04□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms