Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC7.55□□□□□ -1.2
COL3A1P02461 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC7.55□□□□□ -1.2
COL3A1P02461 AC022404.1-201ENST00000555320 273 ntBASIC7.55□□□□□ -1.2
COL3A1P02461 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC7.55□□□□□ -1.2
COL3A1P02461 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC7.55□□□□□ -1.2
COL3A1P02461 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
COL3A1P02461 MIR4505-201ENST00000582238 73 ntBASIC7.55□□□□□ -1.2
COL3A1P02461 AC012616.1-201ENST00000600294 197 ntBASIC7.55□□□□□ -1.2
COL3A1P02461 AP003789.1-201ENST00000617737 605 ntBASIC7.55□□□□□ -1.2
COL3A1P02461 HOTTIP_3.1-201ENST00000619957 337 ntBASIC7.55□□□□□ -1.2
COL3A1P02461 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC7.55□□□□□ -1.2
COL3A1P02461 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL3A1P02461 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC7.55□□□□□ -1.2
COL3A1P02461 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL3A1P02461 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL3A1P02461 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL3A1P02461 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL3A1P02461 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC7.54□□□□□ -1.2
COL3A1P02461 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC7.54□□□□□ -1.2
COL3A1P02461 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL3A1P02461 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL3A1P02461 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL3A1P02461 GNG5P2-201ENST00000372054 207 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 AC005042.1-201ENST00000393397 800 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC7.54□□□□□ -1.2
COL3A1P02461 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC7.54□□□□□ -1.2
COL3A1P02461 BRWD1P3-201ENST00000428816 390 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC7.54□□□□□ -1.2
COL3A1P02461 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC7.54□□□□□ -1.2
COL3A1P02461 RN7SL177P-201ENST00000476596 299 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC7.54□□□□□ -1.2
COL3A1P02461 AC079080.1-201ENST00000479841 822 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 AC087672.1-201ENST00000479876 766 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 RPS7P6-201ENST00000485777 579 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 ST13P12-201ENST00000508958 1094 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC7.54□□□□□ -1.2
COL3A1P02461 AC253576.1-201ENST00000511645 1156 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
COL3A1P02461 AP001804.1-201ENST00000526868 919 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 AC090022.1-201ENST00000546569 311 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 DHFRP1-201ENST00000579682 559 ntBASIC7.54□□□□□ -1.2
COL3A1P02461 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
COL3A1P02461 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
COL3A1P02461 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
COL3A1P02461 STK3-216ENST00000523601 3107 ntTSL 2 BASIC7.54□□□□□ -1.2
COL3A1P02461 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC7.54□□□□□ -1.2
COL3A1P02461 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL3A1P02461 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC7.54□□□□□ -1.2
COL3A1P02461 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 AL161912.4-201ENST00000623889 2468 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
COL3A1P02461 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC7.53□□□□□ -1.2
COL3A1P02461 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC7.53□□□□□ -1.2
COL3A1P02461 AC025470.1-201ENST00000510053 2032 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
COL3A1P02461 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 PWAR1-201ENST00000624188 2414 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 AC123769.1-201ENST00000530992 3192 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC7.53□□□□□ -1.2
COL3A1P02461 AL513325.1-201ENST00000417716 1034 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 KATNBL1P2-201ENST00000433311 835 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 AC092106.1-201ENST00000444291 373 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC7.53□□□□□ -1.2
COL3A1P02461 RPL35AP19-201ENST00000469425 329 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC7.53□□□□□ -1.2
COL3A1P02461 MAL2-207ENST00000522828 603 ntTSL 3 BASIC7.53□□□□□ -1.2
COL3A1P02461 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC7.53□□□□□ -1.2
COL3A1P02461 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC7.53□□□□□ -1.2
COL3A1P02461 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC7.53□□□□□ -1.2
COL3A1P02461 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC7.53□□□□□ -1.2
COL3A1P02461 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC7.53□□□□□ -1.2
COL3A1P02461 FO393422.1-201ENST00000603908 708 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 AL589674.2-201ENST00000604304 337 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 NANOGP3-201ENST00000605855 286 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 AL390318.1-201ENST00000624564 687 ntBASIC7.53□□□□□ -1.2
COL3A1P02461 UGP2-232ENST00000640075 567 ntTSL 5 BASIC7.53□□□□□ -1.2
COL3A1P02461 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC7.53□□□□□ -1.2
COL3A1P02461 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC7.53□□□□□ -1.2
COL3A1P02461 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
COL3A1P02461 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC7.53□□□□□ -1.2
COL3A1P02461 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC7.53□□□□□ -1.2
COL3A1P02461 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL3A1P02461 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC7.52□□□□□ -1.2
COL3A1P02461 MTCO1P11-201ENST00000429111 1528 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC7.52□□□□□ -1.21
COL3A1P02461 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL3A1P02461 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL3A1P02461 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
COL3A1P02461 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL3A1P02461 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms