Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC024587.1-201ENST00000505925 2157 ntBASIC5.38□□□□□ -1.55
LMX1BO60663 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
LMX1BO60663 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.37□□□□□ -1.55
LMX1BO60663 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.37□□□□□ -1.55
LMX1BO60663 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC5.37□□□□□ -1.55
LMX1BO60663 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
LMX1BO60663 HMGN1P20-201ENST00000411849 300 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 RPL23AP18-201ENST00000416139 468 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC002127.1-201ENST00000421305 225 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.37□□□□□ -1.55
LMX1BO60663 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 EMC3-AS1-205ENST00000438698 534 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 AL645936.1-201ENST00000441979 518 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 RAD1P2-201ENST00000446414 663 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.37□□□□□ -1.55
LMX1BO60663 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC5.37□□□□□ -1.55
LMX1BO60663 RBBP4P1-201ENST00000502424 1276 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC5.37□□□□□ -1.55
LMX1BO60663 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.37□□□□□ -1.55
LMX1BO60663 AP001960.1-201ENST00000506494 658 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 AC113398.2-201ENST00000507630 558 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.37□□□□□ -1.55
LMX1BO60663 RN7SKP67-201ENST00000515905 235 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 SNORD116-30-201ENST00000516468 85 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 RNA5SP206-201ENST00000516703 121 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 IGHV4-55-201ENST00000520889 368 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 MTND1P6-201ENST00000523621 946 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.37□□□□□ -1.55
LMX1BO60663 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC004890.3-201ENST00000605566 1095 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC023510.2-201ENST00000622162 746 ntBASIC5.37□□□□□ -1.55
LMX1BO60663 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC5.37□□□□□ -1.55
LMX1BO60663 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.37□□□□□ -1.55
LMX1BO60663 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
LMX1BO60663 ST7-203ENST00000393443 2360 ntTSL 2 BASIC5.37□□□□□ -1.55
LMX1BO60663 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
LMX1BO60663 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
LMX1BO60663 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.37□□□□□ -1.55
LMX1BO60663 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 DNM1P47-203ENST00000571780 12667 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LMX1BO60663 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
LMX1BO60663 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LMX1BO60663 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LMX1BO60663 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LMX1BO60663 RN7SKP77-201ENST00000363261 353 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.36□□□□□ -1.55
LMX1BO60663 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
LMX1BO60663 RPL23AP17-201ENST00000401064 499 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 RN7SKP121-201ENST00000410842 305 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.36□□□□□ -1.55
LMX1BO60663 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.36□□□□□ -1.55
LMX1BO60663 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.36□□□□□ -1.55
LMX1BO60663 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 CXCR2P1-202ENST00000443392 1074 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC5.36□□□□□ -1.55
LMX1BO60663 GAPDHP23-201ENST00000444823 993 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.36□□□□□ -1.55
LMX1BO60663 MORF4-201ENST00000447135 971 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 RPL7L1P3-201ENST00000455249 689 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.36□□□□□ -1.55
LMX1BO60663 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC5.36□□□□□ -1.55
LMX1BO60663 AC084754.1-201ENST00000463466 464 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 RN7SL643P-201ENST00000471845 291 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.36□□□□□ -1.55
LMX1BO60663 RPL5P12-201ENST00000477071 851 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 SNX18P24-201ENST00000505249 671 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms