Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Six4Q61321 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Six4Q61321 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Six4Q61321 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Gm10231-201ENSMUST00000181584 441 ntBASIC17.1■□□□□ 0.33
Six4Q61321 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.1■□□□□ 0.33
Six4Q61321 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Gm10175-202ENSMUST00000208752 441 ntBASIC17.1■□□□□ 0.33
Six4Q61321 Gm7213-201ENSMUST00000215977 950 ntBASIC17.1■□□□□ 0.33
Six4Q61321 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.1■□□□□ 0.33
Six4Q61321 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Six4Q61321 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.1■□□□□ 0.33
Six4Q61321 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Six4Q61321 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six4Q61321 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.09■□□□□ 0.33
Six4Q61321 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.09■□□□□ 0.33
Six4Q61321 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Six4Q61321 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Six4Q61321 Gm13474-201ENSMUST00000122466 815 ntBASIC17.09■□□□□ 0.33
Six4Q61321 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.09■□□□□ 0.33
Six4Q61321 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.09■□□□□ 0.33
Six4Q61321 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six4Q61321 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
Six4Q61321 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Six4Q61321 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Six4Q61321 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Six4Q61321 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Six4Q61321 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Six4Q61321 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Six4Q61321 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Six4Q61321 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Six4Q61321 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Six4Q61321 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Six4Q61321 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Six4Q61321 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Six4Q61321 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Six4Q61321 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Six4Q61321 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Six4Q61321 Actl10-202ENSMUST00000226583 1501 ntBASIC17.07■□□□□ 0.32
Six4Q61321 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.07■□□□□ 0.32
Six4Q61321 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
Six4Q61321 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six4Q61321 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Six4Q61321 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.07■□□□□ 0.32
Six4Q61321 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six4Q61321 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six4Q61321 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Six4Q61321 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Six4Q61321 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six4Q61321 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
Six4Q61321 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC17.06■□□□□ 0.32
Six4Q61321 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six4Q61321 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 77.1 ms