Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.63■□□□□ 0.57
Hmgb1P63158 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Hmgb1P63158 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.62■□□□□ 0.57
Hmgb1P63158 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Hmgb1P63158 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Gm10698-201ENSMUST00000182663 604 ntBASIC18.62■□□□□ 0.57
Hmgb1P63158 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.62■□□□□ 0.57
Hmgb1P63158 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
Hmgb1P63158 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Hmgb1P63158 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Hmgb1P63158 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Hmgb1P63158 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.61■□□□□ 0.57
Hmgb1P63158 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.61■□□□□ 0.57
Hmgb1P63158 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC18.61■□□□□ 0.57
Hmgb1P63158 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Hmgb1P63158 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Hmgb1P63158 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Hmgb1P63158 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Hmgb1P63158 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Hmgb1P63158 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Hmgb1P63158 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC18.59■□□□□ 0.57
Hmgb1P63158 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Hmgb1P63158 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Hmgb1P63158 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Hmgb1P63158 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Hmgb1P63158 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.58■□□□□ 0.57
Hmgb1P63158 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb1P63158 Gm20760-201ENSMUST00000179197 648 ntBASIC18.58■□□□□ 0.56
Hmgb1P63158 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Hmgb1P63158 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Hmgb1P63158 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Hmgb1P63158 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb1P63158 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb1P63158 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb1P63158 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb1P63158 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb1P63158 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms