Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sdc1P18828 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC13.99□□□□□ -0.17
Sdc1P18828 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
Sdc1P18828 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC13.98□□□□□ -0.17
Sdc1P18828 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Sdc1P18828 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC13.98□□□□□ -0.17
Sdc1P18828 Gm12251-201ENSMUST00000117893 792 ntBASIC13.98□□□□□ -0.17
Sdc1P18828 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC13.98□□□□□ -0.17
Sdc1P18828 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Sdc1P18828 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC13.98□□□□□ -0.17
Sdc1P18828 Gm29791-202ENSMUST00000207888 369 ntBASIC13.98□□□□□ -0.17
Sdc1P18828 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC13.98□□□□□ -0.17
Sdc1P18828 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC13.98□□□□□ -0.17
Sdc1P18828 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC13.98□□□□□ -0.17
Sdc1P18828 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sdc1P18828 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC13.97□□□□□ -0.17
Sdc1P18828 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Sdc1P18828 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Sdc1P18828 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC13.97□□□□□ -0.17
Sdc1P18828 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC13.97□□□□□ -0.17
Sdc1P18828 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC13.97□□□□□ -0.17
Sdc1P18828 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC13.97□□□□□ -0.17
Sdc1P18828 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC13.97□□□□□ -0.17
Sdc1P18828 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sdc1P18828 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC13.96□□□□□ -0.17
Sdc1P18828 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC13.96□□□□□ -0.17
Sdc1P18828 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Sdc1P18828 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Sdc1P18828 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC13.96□□□□□ -0.17
Sdc1P18828 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Sdc1P18828 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sdc1P18828 Cap2-205ENSMUST00000225824 1634 ntBASIC13.96□□□□□ -0.17
Sdc1P18828 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Sdc1P18828 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Sdc1P18828 Gm14026-201ENSMUST00000120625 1789 ntBASIC13.96□□□□□ -0.18
Sdc1P18828 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Sdc1P18828 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Sdc1P18828 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Sdc1P18828 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sdc1P18828 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms