Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AC016908.1-201ENST00000442571 1219 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AL513343.1-201ENST00000451818 792 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 RPSAP37-201ENST00000470913 821 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 H3F3AP3-201ENST00000497682 407 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 OR5M14P-201ENST00000506803 618 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 PRMT5P1-201ENST00000514351 598 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 RNA5SP206-201ENST00000516703 121 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 OR4A42P-201ENST00000531397 938 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AC092121.1-201ENST00000569452 202 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AC010547.7-201ENST00000570323 333 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 MIR4420-201ENST00000583944 77 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 SUMO2P15-201ENST00000604285 278 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 KATNBL1P1-201ENST00000605192 748 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AC007620.3-201ENST00000608131 497 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 CUL4AP1-201ENST00000514750 1863 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 DOCK11P1-201ENST00000553480 5932 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 MTCO1P25-201ENST00000414449 1799 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC022613.3-201ENST00000560740 1346 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AL607077.1-201ENST00000401718 499 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AL589994.1-201ENST00000404962 340 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AL049697.3-201ENST00000406493 982 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 SPTLC1P2-201ENST00000407089 121 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AP000534.2-201ENST00000412729 568 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC245884.2-201ENST00000426257 404 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC094019.1-201ENST00000434678 472 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AL500527.1-201ENST00000448532 255 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 PPIAP7-201ENST00000454070 489 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 FTH1P2-201ENST00000466086 412 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC025181.1-201ENST00000477507 416 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 RPL23AP68-201ENST00000480924 445 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 RN7SKP67-201ENST00000515905 235 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 KCTD9P6-201ENST00000522306 950 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AP000620.1-201ENST00000527147 504 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC007956.1-201ENST00000555623 542 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC012358.3-204ENST00000599475 978 ntTSL 3 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 RNA5SP440-201ENST00000612665 119 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AC003001.2-201ENST00000616294 831 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 AL139254.3-201ENST00000641097 674 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms