Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC022325.1-201ENST00000502748 2199 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 SNORA43.1-201ENST00000364863 140 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 MIR433-201ENST00000384837 93 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC016908.1-201ENST00000442571 1219 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 HMGN1P36-201ENST00000446623 298 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 MTND6P5-201ENST00000448266 512 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 CST12P-201ENST00000457644 362 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 COX6B1P2-201ENST00000489624 230 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 Y_RNA.667-201ENST00000516212 107 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 RNA5SP434-201ENST00000516647 121 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC027544.3-201ENST00000535082 757 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC018558.5-201ENST00000565840 952 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 MIR4433B-201ENST00000581329 102 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC090236.2-201ENST00000587933 1101 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC008536.1-201ENST00000602872 669 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AP000550.3-201ENST00000637734 379 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 MIPEPP2-201ENST00000422560 1819 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 AC123769.1-201ENST00000530992 3192 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 BIN2P1-201ENST00000504996 1530 ntBASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 RBMY1HP-201ENST00000382759 1389 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC011416.1-201ENST00000514947 1732 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC015689.2-201ENST00000528172 1738 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 RNF19BPY-201ENST00000458209 1550 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 OR11H13P-201ENST00000359695 979 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC245096.1-201ENST00000413104 546 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 BMS1P13-201ENST00000417301 885 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AL513325.1-201ENST00000417716 1034 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC097721.1-201ENST00000427150 1253 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AL121776.1-201ENST00000429337 372 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AL355355.1-201ENST00000442900 793 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 BMS1P10-201ENST00000443754 1120 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 RPL36AP39-201ENST00000445859 318 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 CT45A11P-201ENST00000448043 1134 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC023141.9-201ENST00000458734 412 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 RPSAP39-201ENST00000467439 883 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC124945.1-201ENST00000485133 188 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 FTH1P8-201ENST00000498161 514 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC114781.3-201ENST00000512083 142 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 TMEM97P2-201ENST00000517841 403 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 IGLV2-28-201ENST00000520681 304 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms