Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC6.28□□□□□ -1.4
MSX2P35548 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX2P35548 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX2P35548 AC007599.1-201ENST00000568688 1174 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC6.28□□□□□ -1.4
MSX2P35548 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC6.28□□□□□ -1.4
MSX2P35548 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC6.28□□□□□ -1.4
MSX2P35548 AC061975.3-201ENST00000583209 244 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AL353778.1-201ENST00000603149 408 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AC007262.1-201ENST00000604099 321 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AC005070.2-201ENST00000604391 260 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AC099785.1-201ENST00000605697 437 ntBASIC6.28□□□□□ -1.4
MSX2P35548 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC6.28□□□□□ -1.4
MSX2P35548 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC6.28□□□□□ -1.4
MSX2P35548 AC092184.1-201ENST00000625042 715 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AC006927.2-201ENST00000639256 389 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AC062022.1-201ENST00000451026 1684 ntBASIC6.28□□□□□ -1.4
MSX2P35548 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX2P35548 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
MSX2P35548 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.28□□□□□ -1.4
MSX2P35548 AC010168.2-201ENST00000562691 5428 ntBASIC6.28□□□□□ -1.4
MSX2P35548 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.27□□□□□ -1.4
MSX2P35548 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.4
MSX2P35548 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.27□□□□□ -1.4
MSX2P35548 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 TUBBP10-201ENST00000427668 1301 ntBASIC6.27□□□□□ -1.41
MSX2P35548 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX2P35548 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 MBNL3-203ENST00000370849 1444 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX2P35548 PWRN1-212ENST00000569908 1435 ntBASIC6.27□□□□□ -1.41
MSX2P35548 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
MSX2P35548 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX2P35548 AC102941.1-201ENST00000567616 1537 ntBASIC6.27□□□□□ -1.41
MSX2P35548 GMFG-201ENST00000253054 616 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX2P35548 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
MSX2P35548 TPPP2-201ENST00000321760 752 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
MSX2P35548 SNORD8-201ENST00000363915 110 ntBASIC6.27□□□□□ -1.41
MSX2P35548 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
MSX2P35548 Y_RNA.436-201ENST00000384097 102 ntBASIC6.27□□□□□ -1.41
MSX2P35548 TRAV6-201ENST00000390428 404 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
MSX2P35548 AL138880.1-201ENST00000405824 642 ntBASIC6.27□□□□□ -1.41
MSX2P35548 MIR1231-201ENST00000408101 92 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX2P35548 AL663061.1-201ENST00000416625 580 ntBASIC6.27□□□□□ -1.41
MSX2P35548 RPS17P17-201ENST00000419392 409 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AC008758.2-201ENST00000420038 695 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX2P35548 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX2P35548 OSTCP5-201ENST00000425293 453 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX2P35548 RPS7P2-201ENST00000435134 607 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AL359265.1-201ENST00000440296 795 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 LINC01364-201ENST00000452509 889 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 MTCO3P16-201ENST00000454456 754 ntBASIC6.27□□□□□ -1.41
MSX2P35548 RPL7P17-201ENST00000470927 724 ntBASIC6.27□□□□□ -1.41
MSX2P35548 RPS17P11-201ENST00000474297 293 ntBASIC6.27□□□□□ -1.41
MSX2P35548 PRELID3BP7-201ENST00000503606 469 ntBASIC6.27□□□□□ -1.41
MSX2P35548 MTCO1P31-201ENST00000506355 492 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AC113420.1-201ENST00000507903 571 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AC027315.1-201ENST00000511592 469 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.27□□□□□ -1.41
MSX2P35548 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX2P35548 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 DUXAP6-201ENST00000553858 601 ntBASIC6.27□□□□□ -1.41
MSX2P35548 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 NDUFAF4P1-201ENST00000559425 519 ntBASIC6.27□□□□□ -1.41
MSX2P35548 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 RN7SL25P-201ENST00000583862 260 ntBASIC6.27□□□□□ -1.41
MSX2P35548 STARD6-204ENST00000584040 660 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AC011447.2-201ENST00000592921 283 ntBASIC6.27□□□□□ -1.41
MSX2P35548 LINC01837-204ENST00000593211 570 ntTSL 4 BASIC6.27□□□□□ -1.41
MSX2P35548 AC006116.6-201ENST00000593258 1103 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX2P35548 AL158042.1-201ENST00000605338 460 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AL136139.1-201ENST00000605568 222 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AC025175.1-201ENST00000606482 759 ntBASIC6.27□□□□□ -1.41
MSX2P35548 Metazoa_SRP.189-201ENST00000614219 303 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AC018558.4-201ENST00000622153 281 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AC087894.3-201ENST00000623682 349 ntBASIC6.27□□□□□ -1.41
MSX2P35548 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX2P35548 AL356585.10-201ENST00000641883 123 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms