Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.09□□□□□ -1.43
HMGA1P17096 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC6.09□□□□□ -1.43
HMGA1P17096 CU639417.4-201ENST00000623928 207 ntBASIC6.09□□□□□ -1.43
HMGA1P17096 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.09□□□□□ -1.43
HMGA1P17096 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HMGA1P17096 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.09□□□□□ -1.43
HMGA1P17096 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.09□□□□□ -1.43
HMGA1P17096 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC6.09□□□□□ -1.43
HMGA1P17096 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.09□□□□□ -1.44
HMGA1P17096 AP002833.3-201ENST00000625075 2265 ntBASIC6.09□□□□□ -1.44
HMGA1P17096 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.09□□□□□ -1.44
HMGA1P17096 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.09□□□□□ -1.44
HMGA1P17096 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGA1P17096 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
HMGA1P17096 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 AL159987.1-201ENST00000347911 293 ntBASIC6.08□□□□□ -1.44
HMGA1P17096 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.08□□□□□ -1.44
HMGA1P17096 OR2W4P-201ENST00000406496 926 ntBASIC6.08□□□□□ -1.44
HMGA1P17096 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC6.08□□□□□ -1.44
HMGA1P17096 EEF1B2P6-201ENST00000445713 673 ntBASIC6.08□□□□□ -1.44
HMGA1P17096 RN7SL466P-201ENST00000497546 295 ntBASIC6.08□□□□□ -1.44
HMGA1P17096 ATP5LP3-201ENST00000514223 304 ntBASIC6.08□□□□□ -1.44
HMGA1P17096 AC090022.1-201ENST00000546569 311 ntBASIC6.08□□□□□ -1.44
HMGA1P17096 MIR4260-201ENST00000583107 67 ntBASIC6.08□□□□□ -1.44
HMGA1P17096 OR7A1P-201ENST00000601206 970 ntBASIC6.08□□□□□ -1.44
HMGA1P17096 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGA1P17096 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.08□□□□□ -1.44
HMGA1P17096 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC6.08□□□□□ -1.44
HMGA1P17096 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.08□□□□□ -1.44
HMGA1P17096 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
HMGA1P17096 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGA1P17096 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HMGA1P17096 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
HMGA1P17096 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.08□□□□□ -1.44
HMGA1P17096 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
HMGA1P17096 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
HMGA1P17096 MRE11P1-201ENST00000464884 2127 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 AC130360.2-201ENST00000533477 1556 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
HMGA1P17096 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 RNA5SP132-201ENST00000364725 118 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.07□□□□□ -1.44
HMGA1P17096 AL391361.1-201ENST00000405580 489 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 Z68694.1-201ENST00000413929 841 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.07□□□□□ -1.44
HMGA1P17096 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.07□□□□□ -1.44
HMGA1P17096 AK3P5-201ENST00000432033 519 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC6.07□□□□□ -1.44
HMGA1P17096 AC005297.1-201ENST00000444765 862 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.07□□□□□ -1.44
HMGA1P17096 RN7SL177P-201ENST00000476596 299 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 RPL32P33-201ENST00000487023 394 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 RPL17P2-201ENST00000491913 451 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 OR7E157P-201ENST00000494376 911 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.07□□□□□ -1.44
HMGA1P17096 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
HMGA1P17096 AC021678.3-201ENST00000517893 476 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 IGBP1P1-201ENST00000554337 1009 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 AL049779.3-201ENST00000557141 606 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.07□□□□□ -1.44
HMGA1P17096 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC6.07□□□□□ -1.44
HMGA1P17096 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 AC063977.5-201ENST00000601044 974 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 HCG18-243ENST00000602498 327 ntTSL 3 BASIC6.07□□□□□ -1.44
HMGA1P17096 AL691477.1-201ENST00000624398 162 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC6.07□□□□□ -1.44
HMGA1P17096 MFSD8-219ENST00000641228 2559 ntBASIC6.07□□□□□ -1.44
HMGA1P17096 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGA1P17096 AC027279.4-201ENST00000624371 2072 ntBASIC6.06□□□□□ -1.44
HMGA1P17096 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HMGA1P17096 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HMGA1P17096 SRRM1P3-201ENST00000426911 2678 ntBASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms