Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AL360013.1-201ENST00000419031 858 ntBASIC6.66□□□□□ -1.34
COPB1P53618 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COPB1P53618 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.66□□□□□ -1.34
COPB1P53618 AC073410.1-201ENST00000435125 589 ntBASIC6.66□□□□□ -1.34
COPB1P53618 LINC00328-2P-201ENST00000436585 219 ntBASIC6.66□□□□□ -1.34
COPB1P53618 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
COPB1P53618 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.66□□□□□ -1.34
COPB1P53618 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC6.66□□□□□ -1.34
COPB1P53618 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.66□□□□□ -1.34
COPB1P53618 AC114324.2-202ENST00000503812 134 ntBASIC6.66□□□□□ -1.34
COPB1P53618 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC6.66□□□□□ -1.34
COPB1P53618 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC6.66□□□□□ -1.34
COPB1P53618 RNU4-18P-201ENST00000516751 149 ntBASIC6.66□□□□□ -1.34
COPB1P53618 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.66□□□□□ -1.34
COPB1P53618 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.66□□□□□ -1.34
COPB1P53618 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC6.66□□□□□ -1.34
COPB1P53618 CYCSP25-201ENST00000525280 316 ntBASIC6.66□□□□□ -1.34
COPB1P53618 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.66□□□□□ -1.34
COPB1P53618 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC6.66□□□□□ -1.34
COPB1P53618 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC6.66□□□□□ -1.34
COPB1P53618 MIR4420-201ENST00000583944 77 ntBASIC6.66□□□□□ -1.34
COPB1P53618 AC005224.3-201ENST00000584683 2140 ntBASIC6.66□□□□□ -1.34
COPB1P53618 WBP1LP11-201ENST00000586141 328 ntBASIC6.66□□□□□ -1.34
COPB1P53618 BNIP3P35-201ENST00000604530 490 ntBASIC6.66□□□□□ -1.34
COPB1P53618 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.66□□□□□ -1.34
COPB1P53618 AC015819.1-201ENST00000613588 663 ntBASIC6.66□□□□□ -1.34
COPB1P53618 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.66□□□□□ -1.34
COPB1P53618 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC6.66□□□□□ -1.34
COPB1P53618 MTCO1P1-201ENST00000624263 1081 ntBASIC6.66□□□□□ -1.34
COPB1P53618 AL590396.2-201ENST00000636511 1041 ntBASIC6.66□□□□□ -1.34
COPB1P53618 AL596275.2-207ENST00000641188 675 ntBASIC6.66□□□□□ -1.34
COPB1P53618 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
COPB1P53618 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COPB1P53618 EIF3EP1-201ENST00000433978 1316 ntBASIC6.66□□□□□ -1.34
COPB1P53618 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
COPB1P53618 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.66□□□□□ -1.34
COPB1P53618 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COPB1P53618 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COPB1P53618 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COPB1P53618 AC018717.1-201ENST00000457712 1505 ntBASIC6.66□□□□□ -1.34
COPB1P53618 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COPB1P53618 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC6.65□□□□□ -1.34
COPB1P53618 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.65□□□□□ -1.34
COPB1P53618 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COPB1P53618 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COPB1P53618 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COPB1P53618 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COPB1P53618 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
COPB1P53618 RPL11P4-201ENST00000332269 436 ntBASIC6.65□□□□□ -1.34
COPB1P53618 RNA5SP77-201ENST00000365394 120 ntBASIC6.65□□□□□ -1.34
COPB1P53618 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.65□□□□□ -1.34
COPB1P53618 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
COPB1P53618 RN7SKP166-201ENST00000410812 305 ntBASIC6.65□□□□□ -1.34
COPB1P53618 AC245096.1-201ENST00000413104 546 ntBASIC6.65□□□□□ -1.34
COPB1P53618 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COPB1P53618 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COPB1P53618 AL390879.2-203ENST00000426943 1121 ntBASIC6.65□□□□□ -1.34
COPB1P53618 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.65□□□□□ -1.34
COPB1P53618 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COPB1P53618 GAPDHP19-201ENST00000431768 1005 ntBASIC6.65□□□□□ -1.34
COPB1P53618 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC6.65□□□□□ -1.34
COPB1P53618 AL031681.1-201ENST00000443304 400 ntBASIC6.65□□□□□ -1.34
COPB1P53618 CUBNP2-201ENST00000443534 1139 ntBASIC6.65□□□□□ -1.34
COPB1P53618 AC025181.1-201ENST00000477507 416 ntBASIC6.65□□□□□ -1.34
COPB1P53618 RPL34P33-201ENST00000486062 334 ntBASIC6.65□□□□□ -1.34
COPB1P53618 AL117692.1-201ENST00000494283 713 ntBASIC6.65□□□□□ -1.34
COPB1P53618 CCDC11P1-201ENST00000503137 1162 ntBASIC6.65□□□□□ -1.34
COPB1P53618 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.65□□□□□ -1.34
COPB1P53618 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.65□□□□□ -1.34
COPB1P53618 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC6.65□□□□□ -1.34
COPB1P53618 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.65□□□□□ -1.34
COPB1P53618 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.65□□□□□ -1.34
COPB1P53618 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.65□□□□□ -1.34
COPB1P53618 AC024405.1-201ENST00000532521 1042 ntBASIC6.65□□□□□ -1.34
COPB1P53618 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.65□□□□□ -1.34
COPB1P53618 AC124891.1-201ENST00000536322 519 ntBASIC6.65□□□□□ -1.34
COPB1P53618 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.65□□□□□ -1.34
COPB1P53618 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC6.65□□□□□ -1.34
COPB1P53618 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.65□□□□□ -1.34
COPB1P53618 AC119403.2-201ENST00000590960 598 ntBASIC6.65□□□□□ -1.34
COPB1P53618 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.65□□□□□ -1.34
COPB1P53618 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC6.65□□□□□ -1.34
COPB1P53618 AC093388.1-201ENST00000609166 430 ntBASIC6.65□□□□□ -1.34
COPB1P53618 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC6.65□□□□□ -1.34
COPB1P53618 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.65□□□□□ -1.34
COPB1P53618 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.65□□□□□ -1.34
COPB1P53618 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COPB1P53618 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.35
COPB1P53618 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
COPB1P53618 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
COPB1P53618 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.35
COPB1P53618 AC217777.1-201ENST00000570034 1471 ntBASIC6.65□□□□□ -1.35
COPB1P53618 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.65□□□□□ -1.35
COPB1P53618 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.65□□□□□ -1.35
COPB1P53618 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.65□□□□□ -1.35
COPB1P53618 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.64□□□□□ -1.35
COPB1P53618 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.64□□□□□ -1.35
COPB1P53618 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.64□□□□□ -1.35
COPB1P53618 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COPB1P53618 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 188.4 ms