Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LDHBP3-201ENST00000514909 822 ntBASIC7.79□□□□□ -1.16
HOXC9P31274 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC7.79□□□□□ -1.16
HOXC9P31274 MIR4260-201ENST00000583107 67 ntBASIC7.79□□□□□ -1.16
HOXC9P31274 AL359513.1-201ENST00000614364 557 ntBASIC7.79□□□□□ -1.16
HOXC9P31274 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC7.79□□□□□ -1.16
HOXC9P31274 AC007683.2-201ENST00000624681 714 ntBASIC7.79□□□□□ -1.16
HOXC9P31274 CCT5-215ENST00000625723 135 ntTSL 5 BASIC7.79□□□□□ -1.16
HOXC9P31274 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC7.79□□□□□ -1.16
HOXC9P31274 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
HOXC9P31274 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.79□□□□□ -1.16
HOXC9P31274 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC7.79□□□□□ -1.16
HOXC9P31274 GTF2IP4-201ENST00000453092 2054 ntBASIC7.79□□□□□ -1.16
HOXC9P31274 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HOXC9P31274 THAP12P9-201ENST00000503971 2360 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC7.78□□□□□ -1.16
HOXC9P31274 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HOXC9P31274 AL049634.1-201ENST00000453770 1720 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
HOXC9P31274 AC009831.5-201ENST00000624000 3189 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HOXC9P31274 AL121768.1-201ENST00000613917 2544 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC7.78□□□□□ -1.16
HOXC9P31274 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
HOXC9P31274 SNORD8-201ENST00000363915 110 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
HOXC9P31274 DPPA2P3-201ENST00000411853 655 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 OR5W1P-201ENST00000423705 938 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC7.78□□□□□ -1.16
HOXC9P31274 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC7.78□□□□□ -1.16
HOXC9P31274 SPRYD7P1-201ENST00000443861 570 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 RPL35AP19-201ENST00000469425 329 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 PFN1P6-201ENST00000476786 399 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC7.78□□□□□ -1.16
HOXC9P31274 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC7.78□□□□□ -1.16
HOXC9P31274 AC090651.1-201ENST00000567865 634 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC7.78□□□□□ -1.16
HOXC9P31274 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC7.78□□□□□ -1.16
HOXC9P31274 AC063977.5-201ENST00000601044 974 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 AC004890.3-201ENST00000605566 1095 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 AL021707.7-201ENST00000607991 416 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC7.78□□□□□ -1.16
HOXC9P31274 AL355377.1-201ENST00000621125 1653 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
HOXC9P31274 PABPC1P8-201ENST00000452851 2086 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 DOCK11P1-201ENST00000553480 5932 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
HOXC9P31274 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HOXC9P31274 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HOXC9P31274 AL031651.1-201ENST00000615357 1438 ntBASIC7.78□□□□□ -1.16
HOXC9P31274 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC7.77□□□□□ -1.16
HOXC9P31274 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC7.77□□□□□ -1.16
HOXC9P31274 MARK2P4-201ENST00000503381 2380 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HOXC9P31274 AC241584.2-201ENST00000637142 2090 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 AL391262.1-201ENST00000556558 1992 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 MAPK10-261ENST00000641050 3109 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.17
HOXC9P31274 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC7.77□□□□□ -1.17
HOXC9P31274 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HOXC9P31274 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
HOXC9P31274 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
HOXC9P31274 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
HOXC9P31274 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC7.77□□□□□ -1.17
HOXC9P31274 AC015977.1-201ENST00000418887 292 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 AC113412.1-201ENST00000425840 504 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 AC023141.8-201ENST00000442554 208 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 AC007386.1-201ENST00000455212 582 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 AC008410.1-201ENST00000483777 339 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 AC021678.3-201ENST00000517893 476 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC7.77□□□□□ -1.17
HOXC9P31274 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC7.77□□□□□ -1.17
HOXC9P31274 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC7.77□□□□□ -1.17
HOXC9P31274 AC018445.2-201ENST00000622987 260 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC7.77□□□□□ -1.17
HOXC9P31274 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HOXC9P31274 AC089998.1-201ENST00000548575 3141 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC7.77□□□□□ -1.17
HOXC9P31274 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC7.77□□□□□ -1.17
HOXC9P31274 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC7.77□□□□□ -1.17
HOXC9P31274 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.17
HOXC9P31274 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
HOXC9P31274 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC7.77□□□□□ -1.17
HOXC9P31274 AC114786.1-201ENST00000512892 1415 ntBASIC7.77□□□□□ -1.17
HOXC9P31274 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
HOXC9P31274 MELK-211ENST00000545008 2236 ntTSL 2 BASIC7.76□□□□□ -1.17
HOXC9P31274 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
HOXC9P31274 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC7.76□□□□□ -1.17
HOXC9P31274 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC7.76□□□□□ -1.17
HOXC9P31274 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC7.76□□□□□ -1.17
HOXC9P31274 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 SNORA58B-201ENST00000364259 136 ntBASIC7.76□□□□□ -1.17
HOXC9P31274 RNA5SP131-201ENST00000365452 119 ntBASIC7.76□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms