Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MRPL50P1-201ENST00000431951 384 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.69□□□□□ -1.34
USP39Q53GS9 GTF3AP6-201ENST00000432585 986 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 MTND2P40-201ENST00000436718 841 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 MTND4P32-201ENST00000437189 1237 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
USP39Q53GS9 AC110602.1-201ENST00000437414 318 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 GAPDHP33-201ENST00000443168 1013 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AC011742.2-201ENST00000443818 352 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AL020997.1-201ENST00000446554 349 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 RSL24D1P3-201ENST00000449255 495 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 HMGB1P7-201ENST00000450921 612 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 Z83838.1-202ENST00000456225 839 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC6.69□□□□□ -1.34
USP39Q53GS9 RPEP1-201ENST00000504507 658 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.69□□□□□ -1.34
USP39Q53GS9 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC6.69□□□□□ -1.34
USP39Q53GS9 AL117351.2-201ENST00000513571 157 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 OR52H2P-201ENST00000514607 902 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6.69□□□□□ -1.34
USP39Q53GS9 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC6.69□□□□□ -1.34
USP39Q53GS9 OR5D2P-201ENST00000524390 911 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 PTS-202ENST00000524931 696 ntTSL 3 BASIC6.69□□□□□ -1.34
USP39Q53GS9 CYCSP25-201ENST00000525280 316 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC6.69□□□□□ -1.34
USP39Q53GS9 AC113192.3-201ENST00000529152 742 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AP004609.2-201ENST00000532177 190 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AC245052.7-201ENST00000601161 359 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AC069304.3-201ENST00000603938 1084 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AL121652.1-201ENST00000608851 448 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AL450226.2-201ENST00000622913 439 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AL512506.2-201ENST00000624472 458 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 AC126544.2-201ENST00000625174 749 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
USP39Q53GS9 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
USP39Q53GS9 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC6.69□□□□□ -1.34
USP39Q53GS9 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.69□□□□□ -1.34
USP39Q53GS9 MROH3P-201ENST00000435735 2676 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
USP39Q53GS9 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.69□□□□□ -1.34
USP39Q53GS9 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 LRRC37A15P-201ENST00000514785 1355 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.69□□□□□ -1.34
USP39Q53GS9 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 AP005139.1-201ENST00000580702 1647 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC137056.2-201ENST00000624055 1958 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AL078595.2-201ENST00000605309 1780 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC017035.1-201ENST00000411999 1115 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 MTCO2P21-201ENST00000419780 677 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 RPP40P1-201ENST00000426762 456 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 AC239367.3-201ENST00000428996 814 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 TXNL1P1-201ENST00000429528 554 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 ELOCP11-201ENST00000436690 332 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 ELOCP16-201ENST00000444494 332 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.68□□□□□ -1.34
USP39Q53GS9 WDR78-207ENST00000488333 613 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.68□□□□□ -1.34
USP39Q53GS9 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC109464.1-201ENST00000511091 819 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 NPIPB14P-203ENST00000532298 987 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC079148.1-201ENST00000565944 819 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AL138895.2-201ENST00000603019 178 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 AP002345.2-201ENST00000609961 904 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AP006248.3-201ENST00000623580 594 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC6.68□□□□□ -1.34
USP39Q53GS9 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
USP39Q53GS9 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC6.68□□□□□ -1.34
USP39Q53GS9 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
USP39Q53GS9 MTND4P5-201ENST00000435821 1374 ntBASIC6.68□□□□□ -1.34
USP39Q53GS9 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms